Stem-loop sequence hsa-mir-4640

Accession

MI0017267

Description

Homo sapiens miR-4640 stem-loop

Stem-loop

cugugggc               cu           agua  a   g 
        ugggccagggagcag  gguggguggga    ag ucu a
        |||||||||||||||  |||||||||||    || ||| c
        acccgguccuuuguc  ccacccacccu    uc agg c
-----gac               cc           -acc  -   u 

Deep sequencing

12 reads, 7 experiments

Genome context

• Coordinates (GRCh37.p5): chr6: 30858660-30858749 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000369212 ; DDR1-053; intron 1

  OTTHUMT00000369213 ; DDR1-054; exon 1

  OTTHUMT00000369212 ; DDR1-053; intron 1

  OTTHUMT00000369213 ; DDR1-054; exon 1

  OTTHUMT00000369212 ; DDR1-053; intron 1

  OTTHUMT00000369213 ; DDR1-054; exon 1

  OTTHUMT00000369203 ; DDR1-044; intron 2

  OTTHUMT00000369203 ; DDR1-044; intron 2

  OTTHUMT00000369203 ; DDR1-044; intron 2

  OTTHUMT00000076495 ; DDR1-006; intron 3

  OTTHUMT00000257577 ; DDR1-018; intron 3

  OTTHUMT00000369209 ; DDR1-050; intron 3

  OTTHUMT00000076495 ; DDR1-006; intron 3

  OTTHUMT00000257577 ; DDR1-018; intron 3

  OTTHUMT00000369209 ; DDR1-050; intron 3

  OTTHUMT00000076495 ; DDR1-006; intron 3

  OTTHUMT00000257577 ; DDR1-018; intron 3

  OTTHUMT00000369209 ; DDR1-050; intron 3

  OTTHUMT00000076492 ; DDR1-002; intron 4

  OTTHUMT00000076493 ; DDR1-004; intron 4

  OTTHUMT00000076496 ; DDR1-010; intron 4

  OTTHUMT00000076497 ; DDR1-016; intron 4

  OTTHUMT00000257572 ; DDR1-012; intron 4

  OTTHUMT00000257573 ; DDR1-013; intron 4

  OTTHUMT00000369045 ; DDR1-020; intron 4

  OTTHUMT00000369046 ; DDR1-021; intron 4

  OTTHUMT00000369052 ; DDR1-027; intron 4

  OTTHUMT00000369194 ; DDR1-035; intron 4

  OTTHUMT00000369198 ; DDR1-039; intron 4

  OTTHUMT00000369204 ; DDR1-045; intron 4

  OTTHUMT00000369205 ; DDR1-046; intron 4

  OTTHUMT00000369206 ; DDR1-047; intron 4

  OTTHUMT00000076492 ; DDR1-002; intron 4

  OTTHUMT00000076493 ; DDR1-004; intron 4

  OTTHUMT00000076496 ; DDR1-010; intron 4

  OTTHUMT00000076497 ; DDR1-016; intron 4

  OTTHUMT00000257572 ; DDR1-012; intron 4

  OTTHUMT00000257573 ; DDR1-013; intron 4

  OTTHUMT00000369045 ; DDR1-020; intron 4

  OTTHUMT00000369046 ; DDR1-021; intron 4

  OTTHUMT00000369052 ; DDR1-027; intron 4

  OTTHUMT00000369194 ; DDR1-035; intron 4

  OTTHUMT00000369198 ; DDR1-039; intron 4

  OTTHUMT00000369204 ; DDR1-045; intron 4

  OTTHUMT00000369205 ; DDR1-046; intron 4

  OTTHUMT00000369206 ; DDR1-047; intron 4

  OTTHUMT00000076492 ; DDR1-002; intron 4

  OTTHUMT00000076493 ; DDR1-004; intron 4

  OTTHUMT00000076496 ; DDR1-010; intron 4

  OTTHUMT00000076497 ; DDR1-016; intron 4

  OTTHUMT00000257572 ; DDR1-012; intron 4

  OTTHUMT00000257573 ; DDR1-013; intron 4

  OTTHUMT00000369045 ; DDR1-020; intron 4

  OTTHUMT00000369046 ; DDR1-021; intron 4

  OTTHUMT00000369052 ; DDR1-027; intron 4

  OTTHUMT00000369194 ; DDR1-035; intron 4

  OTTHUMT00000369198 ; DDR1-039; intron 4

  OTTHUMT00000369204 ; DDR1-045; intron 4

  OTTHUMT00000369205 ; DDR1-046; intron 4

  OTTHUMT00000369206 ; DDR1-047; intron 4

  OTTHUMT00000076491 ; DDR1-003; intron 5

  OTTHUMT00000257574 ; DDR1-014; intron 5

  OTTHUMT00000369195 ; DDR1-036; intron 5

  OTTHUMT00000076491 ; DDR1-003; intron 5

  OTTHUMT00000257574 ; DDR1-014; intron 5

  OTTHUMT00000369195 ; DDR1-036; intron 5

  OTTHUMT00000076491 ; DDR1-003; intron 5

  OTTHUMT00000257574 ; DDR1-014; intron 5

  OTTHUMT00000369195 ; DDR1-036; intron 5

  OTTHUMT00000076494 ; DDR1-005; intron 6

  OTTHUMT00000076494 ; DDR1-005; intron 6

  OTTHUMT00000076494 ; DDR1-005; intron 6

  OTTHUMT00000076490 ; DDR1-001; intron 8

  OTTHUMT00000076490 ; DDR1-001; intron 8

  OTTHUMT00000076490 ; DDR1-001; intron 8

  ENST00000508472 ; DDR1-053; intron 1

  ENST00000507533 ; DDR1-054; exon 1

  ENST00000508472 ; DDR1-053; intron 1

  ENST00000507533 ; DDR1-054; exon 1

  ENST00000508472 ; DDR1-053; intron 1

  ENST00000507533 ; DDR1-054; exon 1

  ENST00000515219 ; DDR1-044; intron 2

  ENST00000515219 ; DDR1-044; intron 2

  ENST00000515219 ; DDR1-044; intron 2

  ENST00000376567 ; DDR1-006; intron 3

  ENST00000513240 ; DDR1-018; intron 3

  ENST00000424544 ; DDR1-050; intron 3

  ENST00000376567 ; DDR1-006; intron 3

  ENST00000513240 ; DDR1-018; intron 3

  ENST00000424544 ; DDR1-050; intron 3

  ENST00000376567 ; DDR1-006; intron 3

  ENST00000513240 ; DDR1-018; intron 3

  ENST00000424544 ; DDR1-050; intron 3

  ENST00000460944 ; DDR1-010; intron 4

  ENST00000513749 ; DDR1-045; intron 4

  ENST00000418800 ; DDR1-012; intron 4

  ENST00000396342 ; DDR1-013; intron 4

  ENST00000512694 ; DDR1-039; intron 4

  ENST00000503628 ; DDR1-046; intron 4

  ENST00000511510 ; DDR1-035; intron 4

  ENST00000504927 ; DDR1-047; intron 4

  ENST00000376568 ; DDR1-002; intron 4

  ENST00000482873 ; DDR1-004; intron 4

  ENST00000508312 ; DDR1-020; intron 4

  ENST00000421124 ; DDR1-016; intron 4

  ENST00000503495 ; DDR1-027; intron 4

  ENST00000431373 ; DDR1-021; intron 4

  ENST00000460944 ; DDR1-010; intron 4

  ENST00000513749 ; DDR1-045; intron 4

  ENST00000418800 ; DDR1-012; intron 4

  ENST00000396342 ; DDR1-013; intron 4

  ENST00000512694 ; DDR1-039; intron 4

  ENST00000503628 ; DDR1-046; intron 4

  ENST00000511510 ; DDR1-035; intron 4

  ENST00000504927 ; DDR1-047; intron 4

  ENST00000376568 ; DDR1-002; intron 4

  ENST00000482873 ; DDR1-004; intron 4

  ENST00000508312 ; DDR1-020; intron 4

  ENST00000421124 ; DDR1-016; intron 4

  ENST00000503495 ; DDR1-027; intron 4

  ENST00000431373 ; DDR1-021; intron 4

  ENST00000460944 ; DDR1-010; intron 4

  ENST00000513749 ; DDR1-045; intron 4

  ENST00000418800 ; DDR1-012; intron 4

  ENST00000396342 ; DDR1-013; intron 4

  ENST00000512694 ; DDR1-039; intron 4

  ENST00000503628 ; DDR1-046; intron 4

  ENST00000511510 ; DDR1-035; intron 4

  ENST00000504927 ; DDR1-047; intron 4

  ENST00000376568 ; DDR1-002; intron 4

  ENST00000482873 ; DDR1-004; intron 4

  ENST00000508312 ; DDR1-020; intron 4

  ENST00000421124 ; DDR1-016; intron 4

  ENST00000503495 ; DDR1-027; intron 4

  ENST00000431373 ; DDR1-021; intron 4

  ENST00000437124 ; DDR1-036; intron 5

  ENST00000376569 ; DDR1-003; intron 5

  ENST00000428153 ; DDR1-014; intron 5

  ENST00000452441 ; DDR1-211; intron 5

  ENST00000437124 ; DDR1-036; intron 5

  ENST00000376569 ; DDR1-003; intron 5

  ENST00000428153 ; DDR1-014; intron 5

  ENST00000452441 ; DDR1-211; intron 5

  ENST00000437124 ; DDR1-036; intron 5

  ENST00000376569 ; DDR1-003; intron 5

  ENST00000428153 ; DDR1-014; intron 5

  ENST00000452441 ; DDR1-210; intron 5

  ENST00000324771 ; DDR1-005; intron 6

  ENST00000376575 ; DDR1-208; intron 6

  ENST00000376570 ; DDR1-207; intron 6

  ENST00000446312 ; DDR1-209; intron 6

  ENST00000324771 ; DDR1-005; intron 6

  ENST00000376575 ; DDR1-208; intron 6

  ENST00000376570 ; DDR1-207; intron 6

  ENST00000446312 ; DDR1-209; intron 6

  ENST00000324771 ; DDR1-005; intron 6

  ENST00000376575 ; DDR1-208; intron 6

  ENST00000376570 ; DDR1-207; intron 6

  ENST00000446312 ; DDR1-209; intron 6

  ENST00000454612 ; DDR1-001; intron 8

  ENST00000454612 ; DDR1-001; intron 8

  ENST00000454612 ; DDR1-001; intron 8

Database links

• ENTREZGENE: 100616237;MIR4640

Mature sequence hsa-miR-4640-5p

• Accession: MIMAT0019699
• Sequence: 9 - ugggccagggagcagcugguggg - 31
• Deep sequencing: 9 reads, 6 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4640-5p
  • MIRDB:hsa-miR-4640-5p
  • TARGETMINER:hsa-miR-4640-5p

Mature sequence hsa-miR-4640-3p

• Accession: MIMAT0019700
• Sequence: 67 - cacccccuguuuccuggcccac - 88
• Deep sequencing: 3 reads, 2 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4640-3p
  • MIRDB:hsa-miR-4640-3p
  • TARGETMINER:hsa-miR-4640-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).