Stem-loop sequence osa-MIR812o

Accession

MI0017255 (change log)

Description

Oryza sativa miR812o stem-loop

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812o
(15 sentences)

Stem-loop

              uc             c   c    a      uuuuuuuauuaguauuuuuauuauuguuagaugauaaaacaug 
5' gguuuucgugu  aacguuugacugu uau uuau ugaaaa                                           a
   |||||||||||  ||||||||||||| ||| |||| ||||||                                           a
3' ucaaaggcaca  uuguaaacuggca gua aaua auuuuu                                           u
              ga             a   a    a      uuaauacuuuuuuuaauuuuucuauucaguacguauuucauaa 

Deep sequencing

1172 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: low

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Database links

• miRBase Tracker:MI0017255

Mature sequence osa-miR812o-5p

• Accession: MIMAT0019681
• Sequence: 7 - cguguucaacguuugacuguc - 27
• Deep sequencing: 105 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000051ACC9_39947

Mature sequence osa-miR812o-3p

• Accession: MIMAT0019682
• Sequence: 146 - gaacggucaaauguuagacacgga - 169
• Deep sequencing: 823 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000027BA07_39947

References

1. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).