Stem-loop sequence osa-MIR3980b

Accession

MI0017253 (change log)

Description

Oryza sativa miR3980b stem-loop

Gene family

MIPF0001268; MIR3980

Literature search

4 open access papers mention osa-MIR3980b
(8 sentences)

Stem-loop

                    uuca  -                    a      ggcgccuuccccuugagcucgggagacgcguucugcuuuggcuggg 
5' gcggcgucuuccucuuc    cc uuaggagaaucgacggccuc gucagg                                              g
   |||||||||||||||||    || |||||||||||||||||||| ||||||                                              g
3' cgccgcagaaggagaag    gg gauccucuuagcugccggag cggucc                                              c
                    ----  c                    c      ugcuucacagacugaggccacuacuacucccgggcggccucggacg 

Deep sequencing

233 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Database links

• miRBase Tracker:MI0017253

Mature sequence osa-miR3980b-5p

• Accession: MIMAT0019677
• Sequence: 31 - aaucgacggccucagucaggg - 51
• Deep sequencing: 174 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00005AF42B_39947

Mature sequence osa-miR3980b-3p

• Accession: MIMAT0019678
• Sequence: 147 - cuggccgaggccgucgauucu - 167
• Deep sequencing: 32 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00001A9A12_39947

References

1. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).