Stem-loop sequence osa-MIR3980a

Accession

MI0017252 (change log)

Description

Oryza sativa miR3980a stem-loop

Gene family

MIPF0001268; MIR3980

Literature search

5 open access papers mention osa-MIR3980a
(11 sentences)

Stem-loop

                  ucu    c                    a      ggcgccuuccccuugagcucgggagacgcauucugcuuuggcuggg 
5' gcggcgucuuccucu   uccc uuaggagaaucgacggccuc gucagg                                              g
   |||||||||||||||   |||| |||||||||||||||||||| ||||||                                              g
3' cgccgcagaaggaga   aggg gauccucuuagcugccggag cggucc                                              c
                  ---    c                    c      ugcuucacagauuaaggccacugcuguucccgggcggccucggacg 

Deep sequencing

236 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Database links

• miRBase Tracker:MI0017252

Mature sequence osa-miR3980a-5p

• Accession: MIMAT0019675
• Sequence: 31 - aaucgacggccucagucaggg - 51
• Deep sequencing: 174 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00005AF42B_39947

Mature sequence osa-miR3980a-3p

• Accession: MIMAT0019676
• Sequence: 147 - cuggccgaggccgucgauucu - 167
• Deep sequencing: 32 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00001A9A12_39947

References

1. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).