Stem-loop sequence osa-MIR1862g

Accession

MI0017249 (change log)

Description

Oryza sativa miR1862g stem-loop

Literature search

11 open access papers mention osa-MIR1862g
(14 sentences)

Stem-loop

              a   a     a    a           a     --         aacacg 
5' ccaaaauaaac aac ucgug uagg ugugacacauc uagua  acgagucug      u
   ||||||||||| ||| ||||| |||| ||||||||||| |||||  |||||||||      a
3' gguuuuauuug uug aguau auuu acacuguguag auuau  ugcuuagac      g
              g   g     g    a           g     gu         cuauaa 

Deep sequencing

2391 reads, 950 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 20340401-20340523 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0017249

Mature sequence osa-miR1862g

• Accession: MIMAT0019670
• Sequence: 104 - augagguugguuuauuuugg - 123
• Deep sequencing: 1420 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002E9F45_39947

References

1. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).