Stem-loop sequence osa-MIR812l

Accession

MI0017246 (change log)

Description

Oryza sativa miR812l stem-loop

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812l
(15 sentences)

Stem-loop

                                a     ua      ua                          uaauuuuuuuguaauuaauauuuuuguuguuauaagaugauaaaacaug 
5' aguacuuccuccguccuauuuuaagugca ccaua  uuuucg  uucaauuuugaucguucgucuuauuu                                                 c
   ||||||||||||||||||||||||||||| |||||  ||||||  ||||||||||||||||||||||||||                                                  
3' uuaugagggagguagggugaaauucacgu gguau  aaaggc  agguugaaauuggcaagcagaauaaa                                                 a
                                a     ua      gc                          uuuuuuuaaaaucuuuuuuaaauuuuguauucagugcgcauuuuaugau 

Deep sequencing

9737 reads, 4.05e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Database links

• miRBase Tracker:MI0017246

Mature sequence osa-miR812l

• Accession: MIMAT0019667
• Sequence: 179 - acgaacgguuaaaguuggacgcgg - 202
• Deep sequencing: 7990 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00001BABA3_39947

References

1. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).