Stem-loop sequence pma-mir-17a

AccessionMI0017014 (change log)
DescriptionPetromyzon marinus miR-17a stem-loop
Gene family MIPF0000001; mir-17
Stem-loop
   ccu     u  -ca       ga        g   u  c  c 
5'    ggccu gc   aagugcu  cauugcag uag ga ga u
      ||||| ||   |||||||  |||||||| ||| || ||  
3'    ccggg cg   uucacga  gugacguc auc uu cu u
   -ug     u  aug       ac        -   u  -  a 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Petromyzon_marinus-7.0; GCA_000148955.1) Overlapping transcripts
GL478379.1: 403379-403460 [+]
intergenic
Clustered miRNAs
< 10kb from pma-mir-17a
pma-mir-17aGL478379.1: 403379-403460 [+]
pma-mir-18bGL478379.1: 403671-403761 [+]
pma-mir-17bGL478379.1: 404297-404390 [+]
pma-mir-19cGL478379.1: 404996-405075 [+]
pma-mir-20aGL478379.1: 406609-406699 [+]
pma-mir-19bGL478379.1: 406814-406897 [+]
pma-mir-92aGL478379.1: 407029-407108 [+]
pma-mir-25bGL478379.1: 408922-409013 [+]
Database links

Mature sequence pma-miR-17a-5p

Accession MIMAT0019383
Previous IDspma-miR-17a
Sequence

12 - 

caaagugcugacauugcagguag

 - 34

Get sequence
Evidence experimental; 454 [1]

Mature sequence pma-miR-17a-3p

Accession MIMAT0019384
Previous IDspma-miR-17a*
Sequence

52 - 

acugcagugcaagcacuuguagc

 - 74

Get sequence
Evidence experimental; 454 [1]

References

1
PMID:20959416 "microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate" Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ Proc Natl Acad Sci U S A. 107:19379-19383(2010).