Stem-loop sequence oar-mir-485

AccessionMI0016950 (change log)
DescriptionOvis aries miR-485 stem-loop
Gene family MIPF0000201; mir-485
Literature search

2 open access papers mention oar-mir-485
(4 sentences)

Stem-loop
   --caaguguccacuua  gu   u         cu       -    a    auuc 
5'                 ug  acu gaagagagg  ggccgug auga uucg    a
                   ||  ||| |||||||||  ||||||| |||| ||||    u
3'                 ac  uga uuucucucc  ucggcac uacu gagc    c
   ggaggcuccgucuuaa  ug   u         uc       a    -    gaaa 
Get sequence
Deep sequencing
1948 reads, 223 reads per million, 13 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64552826-64552936 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-485
oar-mir-487bchr18: 64543093-64543199 [+]
oar-mir-539chr18: 64543862-64543971 [+]
oar-mir-544chr18: 64545480-64545580 [+]
oar-mir-655chr18: 64546384-64546490 [+]
oar-mir-3959chr18: 64548402-64548502 [+]
oar-mir-487achr18: 64548818-64548920 [+]
oar-mir-382chr18: 64551749-64551874 [+]
oar-mir-134chr18: 64552132-64552238 [+]
oar-mir-668chr18: 64552683-64552787 [+]
oar-mir-485chr18: 64552826-64552936 [+]
oar-mir-323bchr18: 64553587-64553696 [+]
oar-mir-154achr18: 64556923-64557027 [+]
oar-mir-154bchr18: 64557232-64557340 [+]
oar-mir-496chr18: 64557719-64557837 [+]
oar-mir-377chr18: 64559316-64559445 [+]
oar-mir-541chr18: 64561254-64561367 [+]
oar-mir-3957chr18: 64561647-64561751 [+]
oar-mir-409chr18: 64562168-64562268 [+]
oar-mir-412chr18: 64562295-64562418 [+]
oar-mir-369chr18: 64562459-64562565 [+]
oar-mir-410chr18: 64562773-64562898 [+]
Database links

Mature sequence oar-miR-485-5p

Accession MIMAT0019312
Sequence

27 - 

agaggcuggccgugaugaauucg

 - 49

Get sequence
Deep sequencing310 reads, 13 experiments
Evidence experimental; Illumina [1]

Mature sequence oar-miR-485-3p

Accession MIMAT0019313
Sequence

64 - 

gucauacacggcucuccucucu

 - 85

Get sequence
Deep sequencing1634 reads, 13 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).