Stem-loop sequence oar-mir-668

AccessionMI0016949 (change log)
DescriptionOvis aries miR-668 stem-loop
Gene family MIPF0000357; mir-668
Literature search

2 open access papers mention oar-mir-668
(5 sentences)

Stem-loop
   -------c   a  cacc  u    a     a   c  cu       g     aauga 
5'         ggg gu    gc gcuu gggua gug gu  cggguga caugc     a
           ||| ||    || |||| ||||| ||| ||  ||||||| |||||      
3'         ccc ca    ug ugga cccau cac cg  gcucacu guacg     u
   cauuccuu   -  -ccu  u    a     -   c  --       -     cucgu 
Get sequence
Deep sequencing
62 reads, 0 reads per million, 8 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64552683-64552787 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-668
oar-mir-487bchr18: 64543093-64543199 [+]
oar-mir-539chr18: 64543862-64543971 [+]
oar-mir-544chr18: 64545480-64545580 [+]
oar-mir-655chr18: 64546384-64546490 [+]
oar-mir-3959chr18: 64548402-64548502 [+]
oar-mir-487achr18: 64548818-64548920 [+]
oar-mir-382chr18: 64551749-64551874 [+]
oar-mir-134chr18: 64552132-64552238 [+]
oar-mir-668chr18: 64552683-64552787 [+]
oar-mir-485chr18: 64552826-64552936 [+]
oar-mir-323bchr18: 64553587-64553696 [+]
oar-mir-154achr18: 64556923-64557027 [+]
oar-mir-154bchr18: 64557232-64557340 [+]
oar-mir-496chr18: 64557719-64557837 [+]
oar-mir-377chr18: 64559316-64559445 [+]
oar-mir-541chr18: 64561254-64561367 [+]
oar-mir-3957chr18: 64561647-64561751 [+]
oar-mir-409chr18: 64562168-64562268 [+]
oar-mir-412chr18: 64562295-64562418 [+]
oar-mir-369chr18: 64562459-64562565 [+]
Database links

Mature sequence oar-miR-668-5p

Accession MIMAT0019310
Sequence

22 - 

guaagugcgucucgggugagc

 - 42

Get sequence
Deep sequencing1 reads, 1 experiments
Evidence experimental; Illumina [1]

Mature sequence oar-miR-668-3p

Accession MIMAT0019311
Sequence

61 - 

augucacucggcccacuaccc

 - 81

Get sequence
Deep sequencing57 reads, 8 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).