Stem-loop sequence oar-mir-544

AccessionMI0016943 (change log)
DescriptionOvis aries miR-544 stem-loop
Gene family MIPF0000436; mir-544
Literature search

2 open access papers mention oar-mir-544
(6 sentences)

Stem-loop
   --ucag   uu      cua    u           -     u   -ga  c 
5'       auu  caucac   ggga cuuguuaaaag gcaga ucu   uu a
         |||  ||||||   |||| ||||||||||| ||||| |||   ||  
3'       uaa  guagug   cccu gaacgauuuuu cgucu aga   ag g
   ucuucg   uc      -aa    u           a     u   acc  g 
Get sequence
Deep sequencing
182 reads, 0 reads per million, 13 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64545480-64545580 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-544
oar-mir-376echr18: 64537482-64537587 [+]
oar-mir-376cchr18: 64537853-64537957 [+]
oar-mir-376dchr18: 64538218-64538327 [+]
oar-mir-654chr18: 64538374-64538478 [+]
oar-mir-376bchr18: 64538600-64538705 [+]
oar-mir-376achr18: 64538968-64539070 [+]
oar-mir-1185chr18: 64540919-64541024 [+]
oar-mir-3956chr18: 64541653-64541781 [+]
oar-mir-381chr18: 64542580-64542707 [+]
oar-mir-487bchr18: 64543093-64543199 [+]
oar-mir-539chr18: 64543862-64543971 [+]
oar-mir-544chr18: 64545480-64545580 [+]
oar-mir-655chr18: 64546384-64546490 [+]
oar-mir-3959chr18: 64548402-64548502 [+]
oar-mir-487achr18: 64548818-64548920 [+]
oar-mir-382chr18: 64551749-64551874 [+]
oar-mir-134chr18: 64552132-64552238 [+]
oar-mir-668chr18: 64552683-64552787 [+]
oar-mir-485chr18: 64552826-64552936 [+]
oar-mir-323bchr18: 64553587-64553696 [+]
Database links

Mature sequence oar-miR-544-5p

Accession MIMAT0019298
Sequence

23 - 

ucuuguuaaaaggcagauucu

 - 43

Get sequence
Deep sequencing115 reads, 13 experiments
Evidence experimental; Illumina [1]

Mature sequence oar-miR-544-3p

Accession MIMAT0019299
Sequence

59 - 

auucugcauuuuuagcaaguu

 - 79

Get sequence
Deep sequencing67 reads, 11 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).