Stem-loop sequence oar-mir-539

AccessionMI0016942 (change log)
DescriptionOvis aries miR-539 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop
   ca    ---  --uaucuc     ug          a      g    -    -   u 
5'   cguc   gc        auacu  aggagaaauu uccuug ugug uuca cuu a
     ||||   ||        |||||  |||||||||| |||||| |||| |||| ||| u
3'   gcgg   cg        uauga  uuuucuuuaa aggaac auac aagu ggg u
   -g    cuc  uccuaaac     gu          c      -    u    a   u 
Get sequence
Deep sequencing
83 reads, 0 reads per million, 10 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64543862-64543971 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-539
oar-mir-3958chr18: 64534803-64534906 [+]
oar-mir-376echr18: 64537482-64537587 [+]
oar-mir-376cchr18: 64537853-64537957 [+]
oar-mir-376dchr18: 64538218-64538327 [+]
oar-mir-654chr18: 64538374-64538478 [+]
oar-mir-376bchr18: 64538600-64538705 [+]
oar-mir-376achr18: 64538968-64539070 [+]
oar-mir-1185chr18: 64540919-64541024 [+]
oar-mir-3956chr18: 64541653-64541781 [+]
oar-mir-381chr18: 64542580-64542707 [+]
oar-mir-487bchr18: 64543093-64543199 [+]
oar-mir-539chr18: 64543862-64543971 [+]
oar-mir-544chr18: 64545480-64545580 [+]
oar-mir-655chr18: 64546384-64546490 [+]
oar-mir-3959chr18: 64548402-64548502 [+]
oar-mir-487achr18: 64548818-64548920 [+]
oar-mir-382chr18: 64551749-64551874 [+]
oar-mir-134chr18: 64552132-64552238 [+]
oar-mir-668chr18: 64552683-64552787 [+]
oar-mir-485chr18: 64552826-64552936 [+]
oar-mir-323bchr18: 64553587-64553696 [+]
Database links

Mature sequence oar-miR-539-5p

Accession MIMAT0019296
Sequence

25 - 

agaaauuauccuugguguguuc

 - 46

Get sequence
Deep sequencing30 reads, 8 experiments
Evidence experimental; Illumina [1]

Mature sequence oar-miR-539-3p

Accession MIMAT0019297
Sequence

62 - 

aaucauacaaggacaauuucuuu

 - 84

Get sequence
Deep sequencing52 reads, 8 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).