Stem-loop sequence oar-mir-1185

AccessionMI0016938 (change log)
DescriptionOvis aries miR-1185 stem-loop
Gene family MIPF0000018; mir-154
Literature search

2 open access papers mention oar-mir-1185
(2 sentences)

Stem-loop
   agcug   --------        u    -     ga a              a  uaa 
5'      ccc        uuugguac ugaa gagag  u cccuuuguauguuc cu   u
        |||        |||||||| |||| |||||  | |||||||||||||| ||    
3'      ggg        aaacuaug guuu uucuc  a gggagacauauaag gg   u
   ----a   ucagucuc        c    a     ag -              c  uaa 
Get sequence
Deep sequencing
729 reads, 123 reads per million, 13 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64540919-64541024 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-1185
oar-mir-543chr18: 64531404-64531526 [+]
oar-mir-495chr18: 64532840-64532965 [+]
oar-mir-3958chr18: 64534803-64534906 [+]
oar-mir-376echr18: 64537482-64537587 [+]
oar-mir-376cchr18: 64537853-64537957 [+]
oar-mir-376dchr18: 64538218-64538327 [+]
oar-mir-654chr18: 64538374-64538478 [+]
oar-mir-376bchr18: 64538600-64538705 [+]
oar-mir-376achr18: 64538968-64539070 [+]
oar-mir-1185chr18: 64540919-64541024 [+]
oar-mir-3956chr18: 64541653-64541781 [+]
oar-mir-381chr18: 64542580-64542707 [+]
oar-mir-487bchr18: 64543093-64543199 [+]
oar-mir-539chr18: 64543862-64543971 [+]
oar-mir-544chr18: 64545480-64545580 [+]
oar-mir-655chr18: 64546384-64546490 [+]
oar-mir-3959chr18: 64548402-64548502 [+]
oar-mir-487achr18: 64548818-64548920 [+]
Database links

Mature sequence oar-miR-1185-5p

Accession MIMAT0019288
Sequence

23 - 

agaggauacccuuuguauguuc

 - 44

Get sequence
Deep sequencing544 reads, 13 experiments
Evidence experimental; Illumina [1]

Mature sequence oar-miR-1185-3p

Accession MIMAT0019289
Sequence

61 - 

auauacagagggagacucuuau

 - 82

Get sequence
Deep sequencing179 reads, 13 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).