Stem-loop sequence oar-mir-329b

AccessionMI0016925 (change log)
DescriptionOvis aries miR-329b stem-loop
Gene family MIPF0000110; mir-329
Literature search

6 open access papers mention oar-mir-329b
(12 sentences)

Stem-loop
   cacugguguucuggucaguguucaccca      cu           uu ug   uuc      u  aa 
5'                             ugguac  gaagagagguu  c  ggu   uguuuc uu  u
                               ||||||  |||||||||||  |  |||   |||||| ||   
3'                             acuaug  cuuuucuccaa  g  cca   acaaag ag  g
   --------------aaguucuacccuaa      ac           uu gu   --c      u  ga 
Get sequence
Deep sequencing
2311 reads, 369 reads per million, 13 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64525872-64525995 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-329b
oar-mir-379chr18: 64521250-64521374 [+]
oar-mir-411achr18: 64522514-64522638 [+]
oar-mir-299chr18: 64523015-64523075 [+]
oar-mir-380chr18: 64524198-64524300 [+]
oar-mir-411bchr18: 64524359-64524459 [+]
oar-mir-1197chr18: 64524697-64524825 [+]
oar-mir-323achr18: 64524877-64524977 [+]
oar-mir-758chr18: 64525175-64525274 [+]
oar-mir-329bchr18: 64525872-64525995 [+]
oar-mir-329achr18: 64526187-64526290 [+]
oar-mir-494chr18: 64529077-64529173 [+]
oar-mir-1193chr18: 64529620-64529722 [+]
oar-mir-543chr18: 64531404-64531526 [+]
oar-mir-495chr18: 64532840-64532965 [+]
oar-mir-3958chr18: 64534803-64534906 [+]
Database links

Mature sequence oar-miR-329b-5p

Accession MIMAT0019263
Sequence

42 - 

gagguuuucuggguuucuguuuc

 - 64

Get sequence
Deep sequencing6 reads, 2 experiments
Evidence experimental; Illumina [1]

Mature sequence oar-miR-329b-3p

Accession MIMAT0019264
Sequence

79 - 

aacacaccugguuaaccucuuu

 - 100

Get sequence
Deep sequencing2300 reads, 13 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).