Stem-loop sequence oar-mir-380

AccessionMI0016920 (change log)
DescriptionOvis aries miR-380 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop
   -----ccuucccac    cc   a      guu       ga       - ugu 
5'               ggua  uga aagaug   gaccaca  acaugcg c   c
                 ||||  ||| ||||||   |||||||  ||||||| |   u
3'               cuau  acu uucugc   cuggugu  uguaugc g   c
   gacgcugacuuaaa    -a   c      -ac       aa       u uau 
Get sequence
Deep sequencing
3621 reads, 623 reads per million, 13 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64524198-64524300 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-380
oar-mir-379chr18: 64521250-64521374 [+]
oar-mir-411achr18: 64522514-64522638 [+]
oar-mir-299chr18: 64523015-64523075 [+]
oar-mir-380chr18: 64524198-64524300 [+]
oar-mir-411bchr18: 64524359-64524459 [+]
oar-mir-1197chr18: 64524697-64524825 [+]
oar-mir-323achr18: 64524877-64524977 [+]
oar-mir-758chr18: 64525175-64525274 [+]
oar-mir-329bchr18: 64525872-64525995 [+]
oar-mir-329achr18: 64526187-64526290 [+]
oar-mir-494chr18: 64529077-64529173 [+]
oar-mir-1193chr18: 64529620-64529722 [+]
oar-mir-543chr18: 64531404-64531526 [+]
oar-mir-495chr18: 64532840-64532965 [+]
Database links

Mature sequence oar-miR-380-5p

Accession MIMAT0019253
Sequence

23 - 

augguugaccacagaacaugcg

 - 44

Get sequence
Deep sequencing56 reads, 10 experiments
Evidence experimental; Illumina [1]

Mature sequence oar-miR-380-3p

Accession MIMAT0019254
Sequence

59 - 

uauguaaugugguccacgucu

 - 79

Get sequence
Deep sequencing3565 reads, 13 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).