Stem-loop sequence hsa-mir-4516

Accession MI0016882
Description Homo sapiens miR-4516 stem-loop
Stem-loop 
a      --a   u      -ag  ag   agg         gg 
 gggaga   ggg cggggc   gg  ggc   gcaggcucu  g
 ||||||   ||| ||||||   ||  |||   |||||||||  g
 cccucu   ccc gucucg   cc  cug   ugucugggg  u
c      gca   -      gca  ga   -ag         gg
Get sequence
Deep sequencing
161 reads, 17 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr16: 2183120-2183205 [+]
antisense
OTTHUMT00000341688 ; PKD1-001; intron 1
OTTHUMT00000341689 ; PKD1-002; intron 1
OTTHUMT00000341688 ; PKD1-001; intron 1
OTTHUMT00000341689 ; PKD1-002; intron 1
OTTHUMT00000341688 ; PKD1-001; intron 1
OTTHUMT00000341689 ; PKD1-002; intron 1
ENST00000262304 ; PKD1-001; intron 1
ENST00000423118 ; PKD1-002; intron 1
ENST00000306101 ; PKD1-201; intron 1
ENST00000382481 ; PKD1-202; intron 1
ENST00000262304 ; PKD1-001; intron 1
ENST00000423118 ; PKD1-002; intron 1
ENST00000306101 ; PKD1-201; intron 1
ENST00000382481 ; PKD1-202; intron 1
ENST00000262304 ; PKD1-001; intron 1
ENST00000423118 ; PKD1-002; intron 1
Clustered miRNAs
< 10kb from hsa-mir-4516
hsa-mir-4516 chr16: 2183120-2183205 [+]
hsa-mir-3180-5 chr16: 2185978-2186130 [-]
Database links

Mature sequence hsa-miR-4516

Accession MIMAT0019053
Sequence

2 -  

gggagaagggucggggc

 - 18

Get sequence
Deep sequencing 152 reads, 17 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).