Stem-loop sequence hsa-mir-4492

Accession

MI0016854

Description

Homo sapiens miR-4492 stem-loop

Stem-loop

- u  -a      uuc     g    gc   c    agacac 
 c gc  gcgugc   uccag cccc  gcg ggac      a
 | ||  ||||||   ||||| ||||  ||| ||||       
 g cg  cgcgcg   ggguc gggg  cgc ccug      c
g c  ac      --c     -    ac   -    aacagg 

Deep sequencing

35 reads, 18 experiments

Genome context

• Coordinates (GRCh37.p5): chr11: 118781417-118781496 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000389653 ; BCL9L-001; 5'UTR (exon 1)

  OTTHUMT00000389654 ; BCL9L-002; intron 1

  OTTHUMT00000389658 ; BCL9L-010; intron 1

  OTTHUMT00000389660 ; BCL9L-006; intron 1

  OTTHUMT00000389661 ; BCL9L-005; intron 1

  OTTHUMT00000389653 ; BCL9L-001; 5'UTR (exon 1)

  OTTHUMT00000389654 ; BCL9L-002; intron 1

  OTTHUMT00000389658 ; BCL9L-010; intron 1

  OTTHUMT00000389660 ; BCL9L-006; intron 1

  OTTHUMT00000389661 ; BCL9L-005; intron 1

  OTTHUMT00000389653 ; BCL9L-001; 5'UTR (exon 1)

  OTTHUMT00000389654 ; BCL9L-002; intron 1

  OTTHUMT00000389658 ; BCL9L-010; intron 1

  OTTHUMT00000389660 ; BCL9L-006; intron 1

  OTTHUMT00000389661 ; BCL9L-005; intron 1

  ENST00000334801 ; BCL9L-001; 5'UTR (exon 1)

  ENST00000526143 ; BCL9L-002; intron 1

  ENST00000530293 ; BCL9L-010; intron 1

  ENST00000532899 ; BCL9L-006; intron 1

  ENST00000534238 ; BCL9L-005; intron 1

  ENST00000392849 ; BCL9L-201; 5'UTR (exon 1)

  ENST00000431085 ; BCL9L-202; 5'UTR (exon 1)

  ENST00000334801 ; BCL9L-001; 5'UTR (exon 1)

  ENST00000526143 ; BCL9L-002; intron 1

  ENST00000530293 ; BCL9L-010; intron 1

  ENST00000532899 ; BCL9L-006; intron 1

  ENST00000534238 ; BCL9L-005; intron 1

  ENST00000392849 ; BCL9L-201; 5'UTR (exon 1)

  ENST00000431085 ; BCL9L-202; 5'UTR (exon 1)

  ENST00000334801 ; BCL9L-001; 5'UTR (exon 1)

  ENST00000526143 ; BCL9L-002; intron 1

  ENST00000530293 ; BCL9L-010; intron 1

  ENST00000532899 ; BCL9L-006; intron 1

  ENST00000534238 ; BCL9L-005; intron 1

Database links

• ENTREZGENE: 100616376;MIR4492

Mature sequence hsa-miR-4492

• Accession: MIMAT0019027
• Sequence: 58 - ggggcugggcgcgcgcc - 74
• Deep sequencing: 32 reads, 18 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4492
  • MIRDB:hsa-miR-4492
  • TARGETMINER:hsa-miR-4492

References

1. PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).