Stem-loop sequence hsa-mir-548aj-2

Accession MI0016815
Description Homo sapiens miR-548aj-2 stem-loop
Gene family MIPF0000317; mir-548
Stem-loop 
a                c                          c 
 agguauuagguuggug aaaaguaauugcaguuuuugcuauua u
 |||||||||||||||| ||||||||||||||||||||||||||  
 uuuauaauccaaccac uuuucauuaacgucaaaaaugguaau u
a                a                          u
Get sequence
Deep sequencing
40 reads, 15 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chrX: 37883148-37883239 [-]
sense
ENST00000408539 ; AL121578.1-201; exon 1
ENST00000408539 ; MIR548AJ2-201; exon 1
antisense
OTTHUMT00000080883 ; SYTL5-001; intron 1
OTTHUMT00000080883 ; SYTL5-001; intron 1
OTTHUMT00000080883 ; SYTL5-001; intron 1
OTTHUMT00000363378 ; RP5-972B16.2-001; intron 3
OTTHUMT00000363378 ; RP5-972B16.2-001; intron 3
OTTHUMT00000363378 ; RP5-972B16.2-001; intron 3
ENST00000297875 ; SYTL5-001; intron 1
ENST00000357972 ; SYTL5-201; intron 1
ENST00000297875 ; SYTL5-001; intron 1
ENST00000357972 ; SYTL5-201; intron 1
ENST00000297875 ; SYTL5-001; intron 1
ENST00000357972 ; SYTL5-201; intron 1
ENST00000465127 ; RP5-972B16.2-001; intron 3
ENST00000465127 ; RP5-972B16.2-001; intron 3
ENST00000465127 ; RP5-972B16.2-001; intron 3
Database links

Mature sequence hsa-miR-548aj-5p

Accession MIMAT0022739
Sequence

16 -  

ugcaaaaguaauugcaguuuuug

 - 38

Get sequence
Deep sequencing 15 reads, 9 experiments
Evidence not experimental
Predicted targets

Mature sequence hsa-miR-548aj-3p

Accession MIMAT0018990
Previous IDs hsa-miR-548aj
Sequence

55 -  

uaaaaacugcaauuacuuuua

 - 75

Get sequence
Deep sequencing 24 reads, 8 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).