Stem-loop sequence hsa-mir-4448

Accession

MI0016791

Description

Homo sapiens miR-4448 stem-loop

Stem-loop

a  agug   aaa    aa   ugc         auuau    a 
 gg    acc   agac  gag   gagccuucu     gccc g
 ||    |||   ||||  |||   |||||||||     |||| a
 cc    ugg   ucug  uuc   cucgggaga     cggg c
a  guaa   gga    -g   ---         -ccac    a 

Deep sequencing

1783 reads, 19 experiments

Genome context

• Coordinates (GRCh37.p5): chr3: 183604588-183604673 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000346462 ; RP11-315J22.5-002; intron 1

  OTTHUMT00000346462 ; RP11-315J22.5-002; intron 1

  OTTHUMT00000346462 ; RP11-315J22.5-002; intron 1

  ENST00000445165 ; RP11-315J22.5-002; intron 1

  ENST00000445165 ; RP11-315J22.5-002; intron 1

  ENST00000445165 ; RP11-315J22.5-002; intron 1

Database links

• ENTREZGENE: 100616127;MIR4448

Mature sequence hsa-miR-4448

• Accession: MIMAT0018967
• Sequence: 61 - ggcuccuuggucuaggggua - 80
• Deep sequencing: 1783 reads, 19 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4448
  • MIRDB:hsa-miR-4448
  • TARGETMINER:hsa-miR-4448

References

1. PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).