Stem-loop sequence hsa-mir-4440

Accession

MI0016783

Description

Homo sapiens miR-4440 stem-loop

Stem-loop

c   -   caa      g   ug  g  ug -ug      acc    cu 
 ucu cac   gcaagu cag  gg cu  c   gcuugc   guga  c
 ||| |||   |||||| |||  || ||  |   ||||||   ||||  c
 aga gug   cguucg guc  uc gg  g   ugaacg   cacu  c
u   a   uca      -   gu  g  gu cug      aac    cu 

Deep sequencing

5 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chr2: 239990513-239990610 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000326233 ; HDAC4-012; intron 1

  OTTHUMT00000326233 ; HDAC4-012; intron 1

  OTTHUMT00000326233 ; HDAC4-012; intron 1

  OTTHUMT00000257174 ; HDAC4-001; intron 22

  OTTHUMT00000257174 ; HDAC4-001; intron 22

  OTTHUMT00000257174 ; HDAC4-001; intron 22

  ENST00000494800 ; HDAC4-012; intron 1

  ENST00000494800 ; HDAC4-012; intron 1

  ENST00000494800 ; HDAC4-012; intron 1

  ENST00000543185 ; HDAC4-204; intron 16

  ENST00000543185 ; HDAC4-204; intron 16

  ENST00000543185 ; HDAC4-202; intron 16

  ENST00000345617 ; HDAC4-001; intron 22

  ENST00000456922 ; HDAC4-202; intron 22

  ENST00000345617 ; HDAC4-001; intron 22

  ENST00000456922 ; HDAC4-202; intron 22

  ENST00000345617 ; HDAC4-001; intron 22

Database links

• ENTREZGENE: 100616397;MIR4440

Mature sequence hsa-miR-4440

• Accession: MIMAT0018958
• Sequence: 65 - ugucguggggcuugcuggcuug - 86
• Deep sequencing: 5 reads, 3 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-4440
  • MIRDB:hsa-miR-4440
  • TARGETMINER:hsa-miR-4440

References

1. PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).