Stem-loop sequence hsa-mir-550b-1

Accession

MI0016686

Description

Homo sapiens miR-550b-1 stem-loop

Gene family

MIPF0000334; mir-550

Stem-loop

a  - ac       ----agau                  ca  aucuua 
 ga g  uuguugg        gugccugagggaguaaga  cu      c
 || |  |||||||        ||||||||||||||||||  ||       
 cu c  aacgacc        cacggacucccucauucu  gg      a
a  a ga       gaccacgu                  cg  acaaca 

Deep sequencing

8 reads, 6 experiments

Genome context

• Coordinates (GRCh37.p5): chr7: 30329410-30329506 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000214992 ; ZNRF2-001; intron 1

  OTTHUMT00000214992 ; ZNRF2-001; intron 1

  OTTHUMT00000214992 ; ZNRF2-001; intron 1

  ENST00000323037 ; ZNRF2-001; intron 1

  ENST00000323037 ; ZNRF2-001; intron 1

  ENST00000323037 ; ZNRF2-001; intron 1

  ENST00000319243 ; ZNRF2-201; intron 2

  ENST00000319243 ; ZNRF2-201; intron 2

Clustered miRNAs

< 10kb from hsa-mir-550b-1

• hsa-mir-550a-1: chr7: 30329410-30329506 [+]
• hsa-mir-550b-1: chr7: 30329410-30329506 [-]

Database links

• ENTREZGENE: 100500883;MIR550B1

Mature sequence hsa-miR-550b-2-5p

• Accession: MIMAT0022737
• Sequence: 16 - augugccugagggaguaagaca - 37
• Deep sequencing: 6 reads, 2 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-550b-2-5p
  • MIRDB:hsa-miR-550b-2-5p
  • TARGETMINER:hsa-miR-550b-2-5p

Mature sequence hsa-miR-550b-3p

• Accession: MIMAT0018445
• Previous IDs: hsa-miR-550b
• Sequence: 58 - ucuuacucccucaggcacug - 77
• Deep sequencing: 10 reads, 4 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-550b-3p
  • MIRDB:hsa-miR-550b-3p
  • RNA22-HSA:hsa-miR-550b-3p
  • TARGETMINER:hsa-miR-550b-3p

References

1. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).