Stem-loop sequence hsa-mir-642b

Accession MI0016685
Description Homo sapiens miR-642b stem-loop
Gene family MIPF0000468; mir-642
Stem-loop 
           u                     aucc 
gaguugggagg ucccucuccaaaugugucuug    c
||||||||||| |||||||||||||||||||||    c
cucaacccucc agggagagguuuacacagaac    c
           c                     ccca
Get sequence
Deep sequencing
77 reads, 16 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr19: 46178190-46178266 [-]
antisense
ENST00000385039 ; MIR642A-201; exon 1
ENST00000385039 ; MIR642A-201; exon 1
ENST00000385039 ; MIR642A-201; exon 1
ENST00000304207 ; GIPR-202; intron 6
ENST00000304207 ; GIPR-202; intron 6
ENST00000304207 ; GIPR-202; intron 6
ENST00000263281 ; GIPR-201; intron 7
ENST00000263281 ; GIPR-201; intron 7
ENST00000263281 ; GIPR-201; intron 7
Clustered miRNAs
< 10kb from hsa-mir-642b
hsa-mir-642b chr19: 46178190-46178266 [-]
hsa-mir-642a chr19: 46178186-46178282 [+]
Database links

Mature sequence hsa-miR-642b-5p

Accession MIMAT0022736
Sequence

10 -  

gguucccucuccaaaugugucu

 - 31

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence not experimental
Predicted targets

Mature sequence hsa-miR-642b-3p

Accession MIMAT0018444
Previous IDs hsa-miR-642b
Sequence

47 -  

agacacauuuggagagggaccc

 - 68

Get sequence
Deep sequencing 76 reads, 15 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).