Stem-loop sequence hsa-mir-374c

Accession

MI0016684

Description

Homo sapiens miR-374c stem-loop

Gene family

MIPF0000288; mir-374

Stem-loop

aca    caaug                    cu 
   cgga     auaauacaaccugcuaagug  a
   ||||     ||||||||||||||||||||   
   gccu     uauuauguuggacgauucac  g
uga    accua                    ag 

Deep sequencing

95 reads, 16 experiments

Genome context

• Coordinates (GRCh37.p5): chrX: 73438384-73438453 [+]
• Overlapping transcripts:

  antisense

  ENST00000390738 ; MIR374B-201; exon 1

  ENST00000390738 ; MIR374B-201; exon 1

  ENST00000390738 ; MIR374B-201; exon 1

Clustered miRNAs

< 10kb from hsa-mir-374c

• hsa-mir-421: chrX: 73438212-73438296 [-]
• hsa-mir-374b: chrX: 73438382-73438453 [-]
• hsa-mir-374c: chrX: 73438384-73438453 [+]

Database links

• ENTREZGENE: 100500807;MIR374C

Mature sequence hsa-miR-374c-5p

• Accession: MIMAT0018443
• Previous IDs: hsa-miR-374c
• Sequence: 13 - auaauacaaccugcuaagugcu - 34
• Deep sequencing: 84 reads, 16 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-374c-5p
  • MIRDB:hsa-miR-374c-5p
  • RNA22-HSA:hsa-miR-374c-5p
  • TARGETMINER:hsa-miR-374c-5p

Mature sequence hsa-miR-374c-3p

• Accession: MIMAT0022735
• Sequence: 39 - cacuuagcagguuguauuauau - 60
• Deep sequencing: 11 reads, 5 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-374c-3p
  • MIRDB:hsa-miR-374c-3p
  • TARGETMINER:hsa-miR-374c-3p

References

1. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).