Stem-loop sequence ngi-mir-219

Accession MI0016632
Description Nasonia giraulti miR-219 stem-loop
Gene family MIPF0000044; mir-219
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-219_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

In molecular biology, the microRNA miR-219 was predicted in vertebrates by conservation between human, mouse and pufferfish and cloned in pufferfish. It was later predicted and confirmed experimentally in Drosophila. Homologs of miR-219 have since been predicted or experimentally confirmed in a wide range of species, including the platyhelminth Schmidtea mediterranea, several arthropod species and a wide range of vertebrates (MIPF0000044). The hairpin precursors (represented here) are predicted based on base pairing and cross-species conservation; their extents are not known. In this case, the mature sequence is excised from the 5' arm of the hairpin. miR-219 has also been linked with NMDA receptor signalling in humans, and it has been suggested that deregulation of this miRNA can lead to the expression of mental disorders such as schizophrenia.

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Stem-loop
ugucu     ua    u    aa            ---   gug 
     cgggc  ugau gucc  acgcaauucuug   ucu   c
     |||||  |||| ||||  ||||||||||||   |||    
     gcucg  acua cagg  uguguuaagaac   aga   c
-----     cg    -    gg            cau   guu 
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Mature sequence ngi-miR-219

Accession MIMAT0018391
Sequence

13 - 

ugauuguccaaacgcaauucuug

 - 35

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Evidence not experimental

References

1
"Computational Identification and Characterization of Putative miRNAs in Nasonia Species" Sathyamurthy G, Swamy NR Int J Insect Sci. 2:1-13(2010).