Stem-loop sequence hsa-mir-3934

Accession MI0016590
Description Homo sapiens miR-3934 stem-loop
Gene family MIPF0001584; mir-3934
Stem-loop 
-cacagccc       cc   g  uu   g    g  a     g    ag  ag 
         uuccugu  cca uu  cag ugug aa cugag cagg  gc  u
         |||||||  ||| ||  ||| |||| || ||||| ||||  ||   
         agggacg  ggu aa  guc acac uu gacuc guuc  ug  g
ccuaaguuu       -a   g  gg   g    g  g     -    aa  aa
Get sequence
Deep sequencing
348 reads, 20 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr6: 33665905-33666011 [+]
antisense
OTTHUMT00000040208 ; RP11-6B20.2-002; intron 2
OTTHUMT00000040208 ; RP11-6B20.2-002; intron 2
OTTHUMT00000040208 ; RP11-6B20.2-002; intron 2
OTTHUMT00000040207 ; RP11-6B20.2-001; intron 3
OTTHUMT00000040207 ; RP11-6B20.2-001; intron 3
OTTHUMT00000040207 ; RP11-6B20.2-001; intron 3
ENST00000374214 ; C6orf125-002; intron 2
ENST00000374214 ; MNF1-002; intron 2
ENST00000374214 ; MNF1-002; intron 2
ENST00000374231 ; C6orf125-001; intron 3
ENST00000374231 ; MNF1-001; intron 3
ENST00000374231 ; MNF1-001; intron 3
Database links

Mature sequence hsa-miR-3934-5p

Accession MIMAT0018349
Previous IDs hsa-miR-3934
Sequence

25 -  

ucagguguggaaacugaggcag

 - 46

Get sequence
Deep sequencing 345 reads, 17 experiments
Evidence experimental; Solexa [1-2]
Predicted targets

Mature sequence hsa-miR-3934-3p

Accession MIMAT0022975
Sequence

64 -  

ugcucagguugcacagcuggga

 - 85

Get sequence
Evidence experimental; Solexa [2]

References

1
PMID:20498841 "Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers" Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ, Qu LH PLoS One. 5:e10563(2010).
2
PMID:21807764 "Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome" Joyce CE, Zhou X, Xia J, Ryan C, Thrash B, Menter A, Zhang W, Bowcock AM Hum Mol Genet. 20:4025-4040(2011).