Stem-loop sequence gma-MIR156g

AccessionMI0016580 (change log)
DescriptionGlycine max miR156g stem-loop
Gene family MIPF0000008; MIR156
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-156_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

MicroRNA (miRNA) precursor mir-156 is a family of plant non-coding RNA. This microRNA has now been predicted or experimentally confirmed in a range of plant species (MIPF0000008). Animal miRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In plants the precursor sequences may be longer, and the carpel factory (caf) enzyme appears to be involved in processing. In this case the mature sequence comes from the 5' arm of the precursor, and both Arabidopsis thaliana and rice genomes contain a number of related miRNA precursors which give rise to almost identical mature sequences. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA.

Show Wikipedia entry View @ Wikipedia Edit Wikipedia entry
   ugaacaauaucu   ac   u                          --  a      c     a 
5'             uga  agu uguugacagaagauagagagcacagg  ug ucauac caaaa a
               |||  ||| ||||||||||||||||||||||||||  || |||||| |||||  
3'             acu  uca guaacugucuucuaucucucguguuu  ac agugug guuuu g
   ------------   cu   u                          ug  g      u     c 
Get sequence
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Glycine_max_v2.0; GCA_000004515.3) Overlapping transcripts
chr19: 8868796-8868913 [-]
Database links

Mature sequence gma-miR156g

Accession MIMAT0018339

27 - 


 - 46

Get sequence
Evidence experimental; Illumina [1-2]


PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max" Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G BMC Bioinformatics. 11 Suppl 1:S14(2010).