Stem-loop sequence gma-MIR172f

Accession

MI0016574 (change log)

Description

Glycine max miR172f stem-loop

Gene family

MIPF0000035; MIR172

Literature search

27 open access papers mention gma-MIR172f
(125 sentences)

Stem-loop

     g                     a   --g    -c  ag     --g   -  g  u   au  aa 
5' gc gauguagcaucaucaagauuc cau   caaa  gc  guggu   ggu gg ac gug  gc  u
   || ||||||||||||||||||||| |||   ||||  ||  |||||   ||| || || |||  ||  c
3' cg cuacgucguaguaguucuaag gug   guuu  ug  uaccg   cca cc ug cau  ug  u
     a                     a   aag    uc  ga     aaa   a  g  u   cg  aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr11: 26905395-26905527 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016574

Mature sequence gma-miR172f

• Accession: MIMAT0018333
• Sequence: 109 - agaaucuugaugaugcugca - 128
• Evidence: experimental; Illumina [1]

References

1. PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max" Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G BMC Bioinformatics. 11 Suppl 1:S14(2010).