Stem-loop sequence gma-MIR4399

Accession MI0016556
Description Glycine max miR4399 stem-loop
Stem-loop 
caauu      g           uc   c        a         g    ag   gu  aauua       cacau 
     uauuau ugucguuaguc  uuu uguuaagu augacgugg agac  agu  ca     ucauuga     u
     |||||| |||||||||||  ||| |||||||| ||||||||| ||||  |||  ||     |||||||     a
     augaug acagcaaucag  aaa gcaauuca uacuguacc ucug  uca  gu     aguaacu     u
-----      g           ga   a        c         g    cu   ug  ---gc       uccuc
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Genome context
Coordinates (Phytozome5.0) Overlapping transcripts
Gm03: 25185812-25185962 [+]
intergenic
Clustered miRNAs
< 10kb from gma-MIR4399
gma-MIR4399 Gm03: 25185812-25185962 [+]
gma-MIR4387e Gm03: 25186869-25186990 [+]

Mature sequence gma-miR4399

Accession MIMAT0018315
Sequence

122 -  

uuaacgaaaaaggacuaacgac

 - 143

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Evidence experimental; Solexa [1]

References

1
PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max" Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G BMC Bioinformatics. 11 Suppl 1:S14(2010).