Stem-loop sequence ata-MIR172

Accession

MI0016462

Description

Aegilops tauschii miR172 stem-loop

Gene family

MIPF0000035; MIR172

Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-172_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia.

The mir-172 microRNA is thought to target mRNAs coding for APETALA2-like transcription factors. It has been verified experimentally in the model plant, Arabidopsis thaliana (mouse-ear cress). The mature sequence is excised from the 3' arm of the hairpin.

Stem-loop

u  uu    ug  ga     aa   uu      u  ugaugguugau            c a  ---- ug               a      --------------  -        cccuc     cu    cucucu    cucucuc   cu 
 uc  ucag  au  uagcg  ggg  gauaua gu           gguggguguuug g gc    g  guaucaucaagauuc caucca              uc augcaucu     ucucu  cucu      cucu       ucu  c
 ||  ||||  ||  |||||  |||  |||||| ||           |||||||||||| | ||    |  ||||||||||||||| ||||||              || ||||||||     |||||  ||||      ||||       |||   
 ag  aguc  ua  gucgc  ccc  uuauau ca           cuacccgcgaac c cg    c  cguaguaguucuaag guaggu              ag uacguaga     agagg  gagg      gggg       gga  u
u  uu    gu  --     --   --      -  -----------            a a  ccua gu               a      uucauacaauagau  a        uauac     uc    uauauc    uauaucu   uc 

Mature sequence ata-miR172

• Accession: MIMAT0018221
• Sequence: 207 - ugagaaucuugaugaugcugcau - 229
• Evidence: not experimental

References

1. PMID:18521122 "Data mining for miRNAs and their targets in the Triticeae" Dryanova A, Zakharov A, Gulick PJ Genome. 51:433-443(2008).