Stem-loop sequence hsa-mir-3921

Accession

MI0016428

Description

Homo sapiens miR-3921 stem-loop

Stem-loop

                              a         aa 
ccuagcccaguacaaggcauaugguacuca gagacuuag  a
|||||||||||||||||||||||||||||| |||||||||   
ggaucgggucauguuccguauaccaugagu cucugaauc  u
                              -         cc 

Deep sequencing

1 reads, 1 experiments

Genome context

• Coordinates (GRCh37.p5): chr3: 99683158-99683242 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000353069 ; FILIP1L-001; intron 1

  OTTHUMT00000353070 ; FILIP1L-002; intron 1

  OTTHUMT00000353072 ; FILIP1L-004; intron 1

  OTTHUMT00000353069 ; FILIP1L-001; intron 1

  OTTHUMT00000353070 ; FILIP1L-002; intron 1

  OTTHUMT00000353072 ; FILIP1L-004; intron 1

  OTTHUMT00000353069 ; FILIP1L-001; intron 1

  OTTHUMT00000353070 ; FILIP1L-002; intron 1

  OTTHUMT00000353072 ; FILIP1L-004; intron 1

  ENST00000354552 ; FILIP1L-001; intron 1

  ENST00000331335 ; FILIP1L-002; intron 1

  ENST00000398326 ; FILIP1L-004; intron 1

  ENST00000354552 ; FILIP1L-001; intron 1

  ENST00000331335 ; FILIP1L-002; intron 1

  ENST00000398326 ; FILIP1L-004; intron 1

  ENST00000354552 ; FILIP1L-001; intron 1

  ENST00000331335 ; FILIP1L-002; intron 1

  ENST00000398326 ; FILIP1L-004; intron 1

  antisense

  OTTHUMT00000353060 ; C3orf26-001; intron 1

  OTTHUMT00000353061 ; C3orf26-002; intron 1

  OTTHUMT00000353063 ; C3orf26-004; intron 1

  OTTHUMT00000353064 ; C3orf26-005; intron 1

  OTTHUMT00000353060 ; C3orf26-001; intron 1

  OTTHUMT00000353063 ; C3orf26-004; intron 1

  OTTHUMT00000353064 ; C3orf26-005; intron 1

  OTTHUMT00000353061 ; C3orf26-002; intron 1

  OTTHUMT00000353060 ; C3orf26-001; intron 1

  OTTHUMT00000353063 ; C3orf26-004; intron 1

  OTTHUMT00000353064 ; C3orf26-005; intron 1

  OTTHUMT00000353061 ; C3orf26-002; intron 1

  ENST00000421999 ; C3orf26-001; intron 1

  ENST00000463526 ; C3orf26-004; intron 1

  ENST00000491299 ; C3orf26-005; intron 1

  ENST00000496116 ; C3orf26-002; intron 1

  ENST00000421999 ; C3orf26-001; intron 1

  ENST00000463526 ; C3orf26-004; intron 1

  ENST00000491299 ; C3orf26-005; intron 1

  ENST00000496116 ; C3orf26-002; intron 1

  ENST00000421999 ; C3orf26-001; intron 1

  ENST00000463526 ; C3orf26-004; intron 1

  ENST00000491299 ; C3orf26-005; intron 1

  ENST00000496116 ; C3orf26-002; intron 1

Database links

• ENTREZGENE: 100500859;MIR3921

Mature sequence hsa-miR-3921

• Accession: MIMAT0018196
• Sequence: 52 - ucucugaguaccauaugccuugu - 74
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3921
  • MIRDB:hsa-miR-3921
  • RNA22-HSA:hsa-miR-3921
  • TARGETMINER:hsa-miR-3921

References

1. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).