Stem-loop sequence hsa-mir-3917

Accession

MI0016423

Description

Homo sapiens miR-3917 stem-loop

Stem-loop

 g       -g  c  g    g   ug  gg       ag  u    a 
g cgcuuuu  ug gc cccg guc  uu  ugcucag  ug gguc g
| |||||||  || || |||| |||  ||  |||||||  || ||||  
c gcggagg  gc cg gggc ugg  gg  acgaguc  gc ucgg g
 g       ag  u  -    g   gu  --       ag  -    c 

Deep sequencing

14 reads, 8 experiments

Genome context

• Coordinates (GRCh37.p5): chr1: 26232853-26232945 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000385768 ; STMN1-008; intron 1

  OTTHUMT00000019355 ; STMN1-001; intron 1

  OTTHUMT00000019356 ; STMN1-002; intron 1

  OTTHUMT00000019357 ; STMN1-003; intron 1

  OTTHUMT00000385768 ; STMN1-008; intron 1

  OTTHUMT00000019355 ; STMN1-001; intron 1

  OTTHUMT00000019356 ; STMN1-002; intron 1

  OTTHUMT00000019357 ; STMN1-003; intron 1

  OTTHUMT00000385768 ; STMN1-008; intron 1

  OTTHUMT00000019355 ; STMN1-001; intron 1

  OTTHUMT00000019356 ; STMN1-002; intron 1

  OTTHUMT00000019357 ; STMN1-003; intron 1

  ENST00000426559 ; STMN1-008; intron 1

  ENST00000455785 ; STMN1-001; intron 1

  ENST00000465604 ; STMN1-002; intron 1

  ENST00000357865 ; STMN1-003; intron 1

  ENST00000426559 ; STMN1-008; intron 1

  ENST00000455785 ; STMN1-001; intron 1

  ENST00000465604 ; STMN1-002; intron 1

  ENST00000357865 ; STMN1-003; intron 1

  ENST00000426559 ; STMN1-008; intron 1

  ENST00000455785 ; STMN1-001; intron 1

  ENST00000465604 ; STMN1-002; intron 1

  ENST00000357865 ; STMN1-003; intron 1

Database links

• ENTREZGENE: 100500808;MIR3917

Mature sequence hsa-miR-3917

• Accession: MIMAT0018191
• Sequence: 52 - gcucggacugagcagguggg - 71
• Deep sequencing: 8 reads, 4 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3917
  • MIRDB:hsa-miR-3917
  • RNA22-HSA:hsa-miR-3917
  • TARGETMINER:hsa-miR-3917

References

1. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).