Stem-loop sequence hsa-mir-3915

Accession

MI0016420

Description

Homo sapiens miR-3915 stem-loop

Stem-loop

-c   u      ug                a             c  a 
  aag uggcac  uagaauauugaggaaa gauggucuuauug aa g
  ||| ||||||  |||||||||||||||| ||||||||||||| ||  
  uuc acugug  gucuuauaacuccuuu cuaccagaauaac uu a
gu   u      gu                c             u  u 

Deep sequencing

9 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chrX: 32601773-32601869 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000056191 ; DMD-010; intron 1

  OTTHUMT00000056191 ; DMD-010; intron 1

  OTTHUMT00000056191 ; DMD-010; intron 1

  OTTHUMT00000056184 ; DMD-003; intron 2

  OTTHUMT00000056185 ; DMD-004; intron 2

  OTTHUMT00000056186 ; DMD-005; intron 2

  OTTHUMT00000056184 ; DMD-003; intron 2

  OTTHUMT00000056185 ; DMD-004; intron 2

  OTTHUMT00000056186 ; DMD-005; intron 2

  OTTHUMT00000056184 ; DMD-003; intron 2

  OTTHUMT00000056185 ; DMD-004; intron 2

  OTTHUMT00000056186 ; DMD-005; intron 2

  OTTHUMT00000056190 ; DMD-009; intron 3

  OTTHUMT00000056190 ; DMD-009; intron 3

  OTTHUMT00000056190 ; DMD-009; intron 3

  OTTHUMT00000056187 ; DMD-006; intron 13

  OTTHUMT00000056182 ; DMD-001; intron 13

  OTTHUMT00000056183 ; DMD-002; intron 13

  OTTHUMT00000056187 ; DMD-006; intron 13

  OTTHUMT00000056182 ; DMD-001; intron 13

  OTTHUMT00000056183 ; DMD-002; intron 13

  OTTHUMT00000056187 ; DMD-006; intron 13

  OTTHUMT00000056182 ; DMD-001; intron 13

  OTTHUMT00000056183 ; DMD-002; intron 13

  ENST00000480751 ; DMD-010; intron 1

  ENST00000480751 ; DMD-010; intron 1

  ENST00000480751 ; DMD-010; intron 1

  ENST00000488902 ; DMD-003; intron 2

  ENST00000420596 ; DMD-004; intron 2

  ENST00000448370 ; DMD-005; intron 2

  ENST00000488902 ; DMD-003; intron 2

  ENST00000420596 ; DMD-004; intron 2

  ENST00000448370 ; DMD-005; intron 2

  ENST00000488902 ; DMD-003; intron 2

  ENST00000420596 ; DMD-004; intron 2

  ENST00000448370 ; DMD-005; intron 2

  ENST00000447523 ; DMD-009; intron 3

  ENST00000447523 ; DMD-009; intron 3

  ENST00000447523 ; DMD-009; intron 3

  ENST00000534884 ; DMD-206; intron 12

  ENST00000534884 ; DMD-206; intron 12

  ENST00000378677 ; DMD-006; intron 13

  ENST00000357033 ; DMD-001; intron 13

  ENST00000288447 ; DMD-002; intron 13

  ENST00000542849 ; DMD-209; intron 13

  ENST00000535280 ; DMD-207; intron 13

  ENST00000378677 ; DMD-006; intron 13

  ENST00000357033 ; DMD-001; intron 13

  ENST00000288447 ; DMD-002; intron 13

  ENST00000542849 ; DMD-209; intron 13

  ENST00000535280 ; DMD-207; intron 13

  ENST00000378677 ; DMD-006; intron 13

  ENST00000357033 ; DMD-001; intron 13

  ENST00000288447 ; DMD-002; intron 13

Database links

• ENTREZGENE: 100500915;MIR3915

Mature sequence hsa-miR-3915

• Accession: MIMAT0018189
• Sequence: 21 - uugaggaaaagauggucuuauu - 42
• Deep sequencing: 9 reads, 3 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3915
  • MIRDB:hsa-miR-3915
  • RNA22-HSA:hsa-miR-3915
  • TARGETMINER:hsa-miR-3915

References

1. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).