Stem-loop sequence hsa-mir-3913-1

Accession

MI0016417

Description

Homo sapiens miR-3913-1 stem-loop

Gene family

MIPF0001134; mir-3913

Stem-loop

u                                                a 
 uguuuauaauaaacugaaauauuugggacugaucuugaugucugccaa a
 ||||||||||||||||||||||||||||||||||||||||||||||||  
 acagauauuauuugacuuuauaaacccugacuagaacuacagacgguu c
g                                                c 

Deep sequencing

22 reads, 11 experiments

Genome context

• Coordinates (GRCh37.p5): chr12: 69978502-69978603 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-3913-1

• hsa-mir-3913-2: chr12: 69978503-69978602 [+]
• hsa-mir-3913-1: chr12: 69978502-69978603 [-]

Database links

• ENTREZGENE: 100500903;MIR3913-1

Mature sequence hsa-miR-3913-5p

• Accession: MIMAT0018187
• Previous IDs: hsa-miR-3913
• Sequence: 23 - uuugggacugaucuugaugucu - 44
• Deep sequencing: 38 reads, 11 experiments
• Evidence: experimental; Solexa [1-2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3913-5p
  • MIRDB:hsa-miR-3913-5p
  • RNA22-HSA:hsa-miR-3913-5p
  • TARGETMINER:hsa-miR-3913-5p

Mature sequence hsa-miR-3913-3p

• Accession: MIMAT0019225
• Sequence: 59 - agacaucaagaucagucccaaa - 80
• Deep sequencing: 6 reads, 3 experiments
• Evidence: experimental; Solexa [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3913-3p
  • MIRDB:hsa-miR-3913-3p
  • TARGETMINER:hsa-miR-3913-3p

References

1. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).