Stem-loop sequence hsa-mir-3907

Accession

MI0016410

Description

Homo sapiens miR-3907 stem-loop

Stem-loop

       aaa   gu   ugu       cau   uacg     cau       -   u    g     c ag      cc  ag 
ggguugg   gcu  agg   ggagggg   gga    ggggc   gagggug ggg ccag cugga c  gccugc  ug  u
|||||||   |||  |||   |||||||   |||    |||||   ||||||| ||| |||| ||||| |  ||||||  ||  c
cccaacc   cgg  ucc   ccuucuc   ucu    cuccg   cucccac cuc gguc gaccu g  uggacg  ac  c
       --c   --   -uu       ---   ----     --u       a   -    g     c --      --  cc 

Deep sequencing

4 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr7: 151130575-151130725 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000348556 ; CRYGN-004; intron 1

  OTTHUMT00000348556 ; CRYGN-004; intron 1

  OTTHUMT00000348556 ; CRYGN-004; intron 1

  OTTHUMT00000348557 ; CRYGN-005; intron 2

  OTTHUMT00000348555 ; CRYGN-003; intron 2

  OTTHUMT00000348557 ; CRYGN-005; intron 2

  OTTHUMT00000348555 ; CRYGN-003; intron 2

  OTTHUMT00000348557 ; CRYGN-005; intron 2

  OTTHUMT00000348555 ; CRYGN-003; intron 2

  OTTHUMT00000348554 ; CRYGN-002; intron 3

  OTTHUMT00000348553 ; CRYGN-001; intron 3

  OTTHUMT00000348554 ; CRYGN-002; intron 3

  OTTHUMT00000348553 ; CRYGN-001; intron 3

  OTTHUMT00000348554 ; CRYGN-002; intron 3

  OTTHUMT00000348553 ; CRYGN-001; intron 3

  ENST00000478106 ; CRYGN-004; intron 1

  ENST00000478106 ; CRYGN-004; intron 1

  ENST00000478106 ; CRYGN-004; intron 1

  ENST00000462809 ; CRYGN-005; intron 2

  ENST00000491928 ; CRYGN-003; intron 2

  ENST00000462809 ; CRYGN-005; intron 2

  ENST00000491928 ; CRYGN-003; intron 2

  ENST00000462809 ; CRYGN-005; intron 2

  ENST00000491928 ; CRYGN-003; intron 2

  ENST00000476631 ; CRYGN-002; intron 3

  ENST00000337323 ; CRYGN-001; intron 3

  ENST00000476631 ; CRYGN-002; intron 3

  ENST00000337323 ; CRYGN-001; intron 3

  ENST00000476631 ; CRYGN-002; intron 3

  ENST00000337323 ; CRYGN-001; intron 3

  antisense

  OTTHUMT00000348552 ; RP4-555L14.4-001; intron 1

  OTTHUMT00000348552 ; RP4-555L14.4-001; intron 1

  OTTHUMT00000348552 ; RP4-555L14.4-001; intron 1

  ENST00000465549 ; RP4-555L14.4-001; intron 1

  ENST00000465549 ; RP4-555L14.4-001; intron 1

  ENST00000465549 ; RP4-555L14.4-001; intron 1

Database links

• ENTREZGENE: 100500835;MIR3907

Mature sequence hsa-miR-3907

• Accession: MIMAT0018179
• Sequence: 93 - aggugcuccaggcuggcucaca - 114
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3907
  • MIRDB:hsa-miR-3907
  • RNA22-HSA:hsa-miR-3907
  • TARGETMINER:hsa-miR-3907

References

1. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).