Stem-loop sequence hsa-mir-3180-5

AccessionMI0016409 (change log)
Symbol HGNC:MIR3180-5
DescriptionHomo sapiens miR-3180-5 stem-loop
Gene family MIPF0000894; mir-3180
Literature search

6 open access papers mention hsa-mir-3180-5
(58 sentences)

Stem-loop
             --a       u    -c     aac   ---u     g a  u         cc      g    - g    
5' gcuccgcccc   cgucgca gcgc  ccggg   gcg    ggggc g gc uccggaggc  cgcccu cugc c acc 
   ||||||||||   ||||||| ||||  |||||   |||    ||||| | || |||||||||  |||||| |||| | || c
3' cgaggcgggg   gcggugu cgcg  ggccc   cgc    cccug c cg aggccuccg  guggga ggcg g ugu 
             gaa       -    cu     ggu   uacu     a -  u         aa      -    a g    
Get sequence
Deep sequencing
4720 reads, 15.6 reads per million, 77 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr16: 2135977-2136129 [-]
antisense
OTTHUMT00000434574 ; TSC2-016; intron 4
OTTHUMT00000434575 ; TSC2-019; intron 5
OTTHUMT00000319843 ; TSC2-005; intron 9
OTTHUMT00000250658 ; TSC2-002; intron 32
OTTHUMT00000319845 ; TSC2-007; intron 33
OTTHUMT00000434564 ; TSC2-017; intron 33
OTTHUMT00000319841 ; TSC2-003; intron 34
OTTHUMT00000319844 ; TSC2-006; intron 34
OTTHUMT00000319842 ; TSC2-004; intron 35
OTTHUMT00000250657 ; TSC2-001; intron 36
ENST00000569930 ; TSC2-016; intron 4
ENST00000569110 ; TSC2-019; intron 5
ENST00000497886 ; TSC2-005; intron 9
ENST00000439117 ; TSC2-002; intron 32
ENST00000382538 ; TSC2-007; intron 33
ENST00000439673 ; TSC2-017; intron 33
ENST00000401874 ; TSC2-003; intron 34
ENST00000568454 ; TSC2-006; intron 34
ENST00000350773 ; TSC2-004; intron 35
ENST00000353929 ; TSC2-201; intron 35
ENST00000219476 ; TSC2-001; intron 36
Clustered miRNAs
< 10kb from hsa-mir-3180-5
hsa-mir-3180-5chr16: 2135977-2136129 [-]
hsa-mir-4516chr16: 2133119-2133204 [+]
Database links

Mature sequence hsa-miR-3180

Accession MIMAT0018178
Sequence

36 - 

uggggcggagcuuccggag

 - 54

Get sequence
Deep sequencing9356 reads, 63 experiments
Evidence experimental; Illumina [1]
Database links
Predicted targets

References

1
PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).