Stem-loop sequence tca-mir-3858

Accession MI0016339
Description Tribolium castaneum miR-3858 stem-loop
Stem-loop 
    u    u       -  uuu       ggcc 
guuu uuag gaagcga ag   uuucauu    a
|||| |||| ||||||| ||   |||||||    a
uaaa aauc cuucguu uc   aaaguaa    u
    u    u       c  -uc       aaaa
Get sequence
Deep sequencing
178 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG6: 12747514-12747582 [-]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3858
tca-mir-3851e chrLG6: 12748781-12748875 [-]
tca-mir-3851f chrLG6: 12747709-12747803 [-]
tca-mir-3858 chrLG6: 12747514-12747582 [-]
Database links

Mature sequence tca-miR-3858-5p

Accession MIMAT0018782
Sequence

8 -  

agugaagcgaaguuuuuuc

 - 26

Get sequence
Deep sequencing 4 reads, 1 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3858-3p

Accession MIMAT0018783
Sequence

43 -  

ugaaacucucuugcuucucuaa

 - 64

Get sequence
Deep sequencing 168 reads, 2 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).