Stem-loop sequence tca-mir-3850

Accession MI0016324
Description Tribolium castaneum miR-3850 stem-loop
Stem-loop 
guaau    ------------     --u    u                aaac  g   gag   a uc    aa      - aa 
     ugca            uuuga   agau aggccgauauuagucu    aa guu   acu u  uaua  uuauua c  a
     ||||            |||||   |||| ||||||||||||||||    || |||   ||| |  ||||  |||||| |   
     acgu            aagcu   uuua uuugguuguaaucaga    uu uaa   uga g  auau  aauaau g  a
aaaau    uuuuuuucauaa     cau    c                --gc  g   -aa   c ga    gg      c cu
Get sequence
Deep sequencing
586 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG5: 18531941-18532096 [-]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3850
tca-mir-3850 chrLG5: 18531941-18532096 [-]
tca-mir-3869 chrLG5: 18531393-18531464 [+]
Database links

Mature sequence tca-miR-3850-5p

Accession MIMAT0018754
Sequence

21 -  

aggccgauauuagucuaa

 - 38

Get sequence
Deep sequencing 26 reads, 1 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3850-3p

Accession MIMAT0018755
Sequence

103 -  

uucgagacuaauguuggu

 - 120

Get sequence
Deep sequencing 534 reads, 2 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).