Stem-loop sequence tca-mir-2944b

Accession MI0016320
Description Tribolium castaneum miR-2944b stem-loop
Gene family MIPF0001335; mir-2944
Stem-loop 
acuuc        u      uu     -      a g          gauu 
     auuucgca aaugca  uaagg aacuac g ugugaugugu    u
     |||||||| ||||||  ||||| |||||| | ||||||||||    c
     uaaagugu uuaugu  auucc uugaug c acacuaugca    a
aacuc        -      -c     g      c g          aauu
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Deep sequencing
reads, experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG5: 9014499-9014600 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-2944b
tca-mir-9d chrLG5: 9014390-9014482 [+]
tca-mir-2944b chrLG5: 9014499-9014600 [+]
tca-mir-309a chrLG5: 9014623-9014710 [+]
tca-mir-3893 chrLG5: 9015904-9015983 [+]
tca-mir-309b chrLG5: 9016116-9016205 [+]
tca-mir-3791 chrLG5: 9016217-9016301 [+]
Database links

Mature sequence tca-miR-2944b-5p

Accession MIMAT0018746
Sequence

23 -  

uaaggaacuacaggugugaugug

 - 45

Get sequence
Evidence experimental; SOLID [1]

Mature sequence tca-miR-2944b-3p

Accession MIMAT0018747
Sequence

61 -  

uaucacagccguaguugccuuac

 - 83

Get sequence
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).