Stem-loop sequence tca-mir-3477

Accession MI0016315
Description Tribolium castaneum miR-3477 stem-loop
Gene family MIPF0000054; mir-216
Stem-loop 
ugcac  uu   ug     c  ua        ug   ac g     uuug 
     gc  gac  cguuu gu  aucucauu  gua  u ugagg    u
     ||  |||  ||||| ||  ||||||||  |||  | |||||     
     ug  uug  guaaa ca  uaggguaa  cau  a acucc    u
acuuu  uu   gu     a  gc        gu   -c g     uuau
Get sequence
Deep sequencing
2694 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG3: 24360683-24360783 [-]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3477
tca-mir-283 chrLG3: 24364871-24364946 [-]
tca-mir-3477 chrLG3: 24360683-24360783 [-]
tca-mir-12 chrLG3: 24360466-24360552 [-]
Database links

Mature sequence tca-miR-3477-5p

Accession MIMAT0018736
Sequence

23 -  

uaaucucauuugguaacugugagg

 - 46

Get sequence
Deep sequencing 1474 reads, 2 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3477-3p

Accession MIMAT0018737
Sequence

59 -  

ucagacuacugaaugggaucgac

 - 81

Get sequence
Deep sequencing 1220 reads, 2 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).