Stem-loop sequence tca-mir-3842

Accession MI0016311
Description Tribolium castaneum miR-3842 stem-loop
Stem-loop 
uccca    ---cu           gg         u  g   g   gg 
     caac     aacaacaagga  aaaaacgag cg ucg cau  c
     ||||     |||||||||||  ||||||||| || ||| |||  a
     guug     uuguuguuccu  uuuuugcuu gc agc gua  c
uaaaa    cuauu           -a         c  a   -   gu
Get sequence
Deep sequencing
38 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG3: 559271-559366 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3842
tca-mir-3842 chrLG3: 559271-559366 [+]
tca-mir-71 chrLG3: 560700-560778 [+]
tca-mir-2c chrLG3: 560814-560896 [+]
tca-mir-13a chrLG3: 560937-561016 [+]
tca-mir-13b chrLG3: 561053-561126 [+]
tca-mir-2a chrLG3: 561179-561266 [+]
tca-mir-2b chrLG3: 561332-561416 [+]
Database links

Mature sequence tca-miR-3842-5p

Accession MIMAT0018728
Sequence

19 -  

aggaggaaaaacgagucgg

 - 37

Get sequence
Deep sequencing 6 reads, 1 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3842-3p

Accession MIMAT0018729
Sequence

56 -  

gaacgcuucguuuuuauccuug

 - 77

Get sequence
Deep sequencing 32 reads, 2 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).