Stem-loop sequence tca-mir-3825

Accession MI0016286
Description Tribolium castaneum miR-3825 stem-loop
Stem-loop 
aaaau      g            u      u      ua    aua 
     guuuug ugaagauuuguu ucuucu cugcac  uuuu   c
     |||||| |||||||||||| |||||| ||||||  ||||    
     uaaaac auuucugaacaa agaaga ggcgug  aaaa   u
cuucu      a            c      -      cc    aau
Get sequence
Deep sequencing
1334 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG1: 8487284-8487378 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3825
tca-mir-3809 chrLG1: 8487138-8487230 [+]
tca-mir-3825 chrLG1: 8487284-8487378 [+]
tca-mir-3821 chrLG1: 8487592-8487683 [+]
tca-mir-3818 chrLG1: 8487911-8488003 [+]
tca-mir-3813 chrLG1: 8488676-8488768 [+]
tca-mir-3820 chrLG1: 8488902-8488994 [+]
tca-mir-3814 chrLG1: 8489232-8489323 [+]
tca-mir-6007 chrLG1: 8492377-8492463 [+]
tca-mir-3810 chrLG1: 8492765-8492866 [+]
tca-mir-3829 chrLG1: 8494396-8494485 [+]
tca-mir-3807 chrLG1: 8494849-8494947 [+]
tca-mir-3815 chrLG1: 8495199-8495293 [+]
tca-mir-3822 chrLG1: 8495616-8495778 [+]
tca-mir-3812 chrLG1: 8496077-8496196 [+]
tca-mir-3816 chrLG1: 8496207-8496378 [+]
tca-mir-3826 chrLG1: 8496423-8496535 [+]
tca-mir-3817 chrLG1: 8496709-8496824 [+]
tca-mir-3828 chrLG1: 8496935-8497035 [+]
tca-mir-3808 chrLG1: 8497132-8497243 [+]
Database links

Mature sequence tca-miR-3825-5p

Accession MIMAT0018678
Sequence

21 -  

uguuuucuucuucugcacuauuu

 - 43

Get sequence
Deep sequencing 614 reads, 1 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3825-3p

Accession MIMAT0018679
Sequence

56 -  

accgugcggagaagacaacaag

 - 77

Get sequence
Deep sequencing 720 reads, 2 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).