Stem-loop sequence tca-mir-3805b

Accession MI0016278
Description Tribolium castaneum miR-3805b stem-loop
Stem-loop 
aagaa    u c   uau   -    u    u    uu      u    guga 
     gauu g gcc   ucc cagg ccgu caca  cggauu uauu    a
     |||| | |||   ||| |||| |||| ||||  |||||| ||||     
     cuag c ugg   ggg guuc ggua gugu  gcuuag auaa    u
aacaa    c -   -cu   u    u    -    cu      u    auua
Get sequence
Deep sequencing
658 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG1: 8499375-8499478 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3805b
tca-mir-6007 chrLG1: 8492377-8492463 [+]
tca-mir-3810 chrLG1: 8492765-8492866 [+]
tca-mir-3829 chrLG1: 8494396-8494485 [+]
tca-mir-3807 chrLG1: 8494849-8494947 [+]
tca-mir-3815 chrLG1: 8495199-8495293 [+]
tca-mir-3822 chrLG1: 8495616-8495778 [+]
tca-mir-3812 chrLG1: 8496077-8496196 [+]
tca-mir-3816 chrLG1: 8496207-8496378 [+]
tca-mir-3826 chrLG1: 8496423-8496535 [+]
tca-mir-3817 chrLG1: 8496709-8496824 [+]
tca-mir-3828 chrLG1: 8496935-8497035 [+]
tca-mir-3808 chrLG1: 8497132-8497243 [+]
tca-mir-3811a chrLG1: 8497719-8497815 [+]
tca-mir-3811b chrLG1: 8498053-8498138 [+]
tca-mir-3811c-1 chrLG1: 8498375-8498471 [+]
tca-mir-3811c-2 chrLG1: 8498710-8498806 [+]
tca-mir-3811d chrLG1: 8499035-8499138 [+]
tca-mir-3805b chrLG1: 8499375-8499478 [+]
tca-mir-3811e chrLG1: 8499605-8499716 [+]
tca-mir-3806 chrLG1: 8499798-8499943 [+]
tca-mir-3805a chrLG1: 8500013-8500108 [+]
tca-mir-3824 chrLG1: 8501573-8501669 [+]
tca-mir-3823 chrLG1: 8501770-8501860 [+]
Database links

Mature sequence tca-miR-3805b-5p

Accession MIMAT0018662
Sequence

26 -  

uccguucacauucggauuuuauugug

 - 51

Get sequence
Deep sequencing 4 reads, 1 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3805b-3p

Accession MIMAT0018663
Sequence

61 -  

uaugauucgucugugauggucuug

 - 84

Get sequence
Deep sequencing 654 reads, 2 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).