Stem-loop sequence tca-mir-3816

Accession MI0016274
Description Tribolium castaneum miR-3816 stem-loop
Stem-loop 
gauag     a       uu  -   uua   gagc   --gcaaauu     u        ac    c   uu          -ua  u 
     ugcag uuuagaa  gu auu   guu    ugg         uauug ggccgguu  aagg aug  uggcagcaau   gc u
     ||||| |||||||  || |||   |||    |||         ||||| ||||||||  |||| |||  ||||||||||   ||  
     auguu agauuuu  ca uaa   caa    gcc         gugac cugguuaa  uucc uac  accgucguua   ug u
-----     a       uu  c   uuc   -aua   acaaccuuu     u        ca    a   uu          uaa  u
Get sequence
Deep sequencing
6796 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG1: 8496207-8496378 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3816
tca-mir-3809 chrLG1: 8487138-8487230 [+]
tca-mir-3825 chrLG1: 8487284-8487378 [+]
tca-mir-3821 chrLG1: 8487592-8487683 [+]
tca-mir-3818 chrLG1: 8487911-8488003 [+]
tca-mir-3813 chrLG1: 8488676-8488768 [+]
tca-mir-3820 chrLG1: 8488902-8488994 [+]
tca-mir-3814 chrLG1: 8489232-8489323 [+]
tca-mir-6007 chrLG1: 8492377-8492463 [+]
tca-mir-3810 chrLG1: 8492765-8492866 [+]
tca-mir-3829 chrLG1: 8494396-8494485 [+]
tca-mir-3807 chrLG1: 8494849-8494947 [+]
tca-mir-3815 chrLG1: 8495199-8495293 [+]
tca-mir-3822 chrLG1: 8495616-8495778 [+]
tca-mir-3812 chrLG1: 8496077-8496196 [+]
tca-mir-3816 chrLG1: 8496207-8496378 [+]
tca-mir-3826 chrLG1: 8496423-8496535 [+]
tca-mir-3817 chrLG1: 8496709-8496824 [+]
tca-mir-3828 chrLG1: 8496935-8497035 [+]
tca-mir-3808 chrLG1: 8497132-8497243 [+]
tca-mir-3811a chrLG1: 8497719-8497815 [+]
tca-mir-3811b chrLG1: 8498053-8498138 [+]
tca-mir-3811c-1 chrLG1: 8498375-8498471 [+]
tca-mir-3811c-2 chrLG1: 8498710-8498806 [+]
tca-mir-3811d chrLG1: 8499035-8499138 [+]
tca-mir-3805b chrLG1: 8499375-8499478 [+]
tca-mir-3811e chrLG1: 8499605-8499716 [+]
tca-mir-3806 chrLG1: 8499798-8499943 [+]
tca-mir-3805a chrLG1: 8500013-8500108 [+]
tca-mir-3824 chrLG1: 8501573-8501669 [+]
tca-mir-3823 chrLG1: 8501770-8501860 [+]
Database links

Mature sequence tca-miR-3816-5p

Accession MIMAT0018656
Sequence

60 -  

acaaggcauguuuggcagcaau

 - 81

Get sequence
Deep sequencing 4870 reads, 2 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3816-3p

Accession MIMAT0018657
Sequence

96 -  

uugcugccauucauaccuuac

 - 116

Get sequence
Deep sequencing 1924 reads, 2 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).