Stem-loop sequence tca-mir-3806

AccessionMI0016263 (change log)
DescriptionTribolium castaneum miR-3806 stem-loop
Gene family MIPF0001202; mir-3811
Stem-loop
   aacaa      uu  uuuu ag   ----auuuca      uu    uu             u u         uuua 
5'      aaaguu  au    c  agc          accaau  ccug  ucuguucccggau g cacauauuu    a
        ||||||  ||    |  |||          ||||||  ||||  ||||||||||||| | |||||||||     
3'      uuuuag  ua    g  ucg          ugguug  ggau  agaugagggccua c guguauaaa    a
   ---ua      uu  ---u cu   gcaacuaaca      gg    cu             - -         uuau 
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Tcas4.0) Overlapping transcripts
ChLGX: 5783512-5783657 [-]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3806
tca-mir-6007ChLGX: 5790992-5791078 [-]
tca-mir-3810ChLGX: 5790589-5790690 [-]
tca-mir-3829ChLGX: 5788970-5789059 [-]
tca-mir-11636ChLGX: 5788871-5788927 [-]
tca-mir-3807ChLGX: 5788508-5788606 [-]
tca-mir-3815ChLGX: 5788162-5788256 [-]
tca-mir-3822ChLGX: 5787677-5787839 [-]
tca-mir-3812ChLGX: 5787259-5787378 [-]
tca-mir-3816ChLGX: 5787077-5787248 [-]
tca-mir-3826ChLGX: 5786920-5787032 [-]
tca-mir-3817ChLGX: 5786631-5786746 [-]
tca-mir-3828ChLGX: 5786420-5786520 [-]
tca-mir-3808ChLGX: 5786212-5786323 [-]
tca-mir-3811a-1ChLGX: 5785640-5785736 [-]
tca-mir-3806b-1ChLGX: 5785511-5785608 [-]
tca-mir-3811a-5ChLGX: 5785317-5785402 [-]
tca-mir-3806b-2ChLGX: 5785190-5785283 [-]
tca-mir-3811a-4ChLGX: 5784984-5785080 [-]
tca-mir-3806b-3ChLGX: 5784819-5784992 [-]
tca-mir-3811a-2ChLGX: 5784649-5784745 [-]
tca-mir-3806cChLGX: 5784537-5784597 [-]
tca-mir-3811a-3ChLGX: 5784317-5784420 [-]
tca-mir-3806b-4ChLGX: 5784181-5784306 [-]
tca-mir-3805bChLGX: 5783977-5784080 [-]
tca-mir-3811bChLGX: 5783739-5783850 [-]
tca-mir-3806ChLGX: 5783512-5783657 [-]
tca-mir-3805aChLGX: 5783347-5783442 [-]
tca-mir-3824ChLGX: 5781786-5781882 [-]
tca-mir-3823ChLGX: 5781595-5781685 [-]
Database links

Mature sequence tca-miR-3806-5p

Accession MIMAT0018634
Sequence

45 - 

uucuguucccggauugucacauau

 - 68

Get sequence
Evidence experimental; SOLID [1]
Database links

Mature sequence tca-miR-3806-3p

Accession MIMAT0018635
Sequence

85 - 

augugcauccgggaguagaucuag

 - 108

Get sequence
Evidence experimental; SOLID [1]
Database links

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).