Stem-loop sequence tca-mir-3804b

Accession MI0016259
Description Tribolium castaneum miR-3804b stem-loop
Gene family MIPF0001255; mir-3804
Stem-loop 
cucgg      a   --ca        aaca   ucc       u c   uu 
     guuauc gcu    uugcacac    aug   acauucu g gau  c
     |||||| |||    ||||||||    |||   ||||||| | |||  a
     cgaugg cga    agcgugug    uac   uguaagg c cug  u
gaaaa      -   cuaa        --aa   -cu       u a   ca
Get sequence
Deep sequencing
190 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG10: 7551723-7551823 [-]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3804b
tca-mir-3804b chrLG10: 7551723-7551823 [-]
tca-mir-3804a chrLG10: 7547882-7547960 [-]
Database links

Mature sequence tca-miR-3804b-5p

Accession MIMAT0018626
Sequence

18 -  

uugcacacaacaauguccacauucuu

 - 43

Get sequence
Deep sequencing 172 reads, 2 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3804b-3p

Accession MIMAT0018627
Sequence

61 -  

uggaauguuccauaagugugc

 - 81

Get sequence
Deep sequencing 12 reads, 2 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).