Stem-loop sequence mghv-mir-M1-14

Accession MI0016254
Description Mouse gammaherpesvirus 68 miR-M1-14 stem-loop
Stem-loop 
gccc       g         g   - ug 
    cguucug augcugugg aca c  a
    ||||||| ||||||||| ||| |  a
    gcaagac ugcgacauc ugu g  a
uuuu       g         g   c uu
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Genome context
Coordinates (EMBL:U97553.1) Overlapping transcripts
U97553: 5102-5161 [+]
intergenic
Clustered miRNAs
< 10kb from mghv-mir-M1-14
mghv-mir-M1-1 U97553: 196-260 [+]
mghv-mir-M1-10 U97553: 262-322 [+]
mghv-mir-M1-2 U97553: 562-627 [+]
mghv-mir-M1-3 U97553: 638-698 [+]
mghv-mir-M1-11 U97553: 759-811 [+]
mghv-mir-M1-4 U97553: 956-1049 [+]
mghv-mir-M1-5 U97553: 1255-1314 [+]
mghv-mir-M1-6 U97553: 1319-1381 [+]
mghv-mir-M1-7 U97553: 1660-1719 [+]
mghv-mir-M1-12 U97553: 1720-1789 [+]
mghv-mir-M1-8 U97553: 3806-3876 [+]
mghv-mir-M1-14 U97553: 5102-5161 [+]
mghv-mir-M1-15 U97553: 5461-5514 [+]
mghv-mir-M1-9 U97553: 5525-5584 [+]

Mature sequence mghv-miR-M1-14-5p

Accession MIMAT0018174
Previous IDs mghv-miR-M1-14*
Sequence

3 -  

cccguucuggaugcugugggac

 - 24

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Evidence experimental; 454 [1], Northern [2], RT-PCR [2], Solexa [2]

Mature sequence mghv-miR-M1-14-3p

Accession MIMAT0018175
Previous IDs mghv-miR-M1-14
Sequence

38 -  

ugcuacagcgugcagaacguuu

 - 59

Get sequence
Evidence experimental; 454 [1], Northern [1-2], RT-PCR [2], Solexa [2]

References

1
PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
2
PMID:20660200 "Identification of novel microRNA-like molecules generated from herpesvirus and host tRNA transcripts" Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW J Virol. 84:10344-10353(2010).