Stem-loop sequence ame-mir-2788

Accession MI0016140
Description Apis mellifera miR-2788 stem-loop
Gene family MIPF0001204; mir-2788
Stem-loop 
ag     a uu     c    ggg          uau c     g   ----   g 
  guugg g  cguug ggca   uugggguuuc   g ggcau ugc    cuu c
  ||||| |  ||||| ||||   ||||||||||   | ||||| |||    ||| u
  caacu u  gcaac cugu   aacccuaaag   c ccgua acg    gag u
-a     a uc     -    aaa          cuu -     -   uaaa   u
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Genome context
Coordinates (Amel_4.0) Overlapping transcripts
Group1.1: 1174721-1174827 [-]
intergenic
Clustered miRNAs
< 10kb from ame-mir-2788
ame-mir-193 Group1.1: 1180906-1181024 [-]
ame-mir-2788 Group1.1: 1174721-1174827 [-]
Database links

Mature sequence ame-miR-2788

Accession MIMAT0018510
Sequence

65 -  

caaugcccuucgaaaucccaaa

 - 86

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Evidence experimental; SOLID [1]

References

1
PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).