Stem-loop sequence hsa-mir-3688-1

Accession MI0016089
Previous IDs hsa-mir-3688
Description Homo sapiens miR-3688-1 stem-loop
Gene family MIPF0001263; mir-3688
Stem-loop 
          c                          au   ugua 
ucuucacuuu aagaguggcaaagucuuuccauaugu  gua    u
|||||||||| ||||||||||||||||||||||||||  |||    g
agaagugaaa uucucaccguuucagaaagguauaca  cau    u
          u                          --   uguc
Get sequence
Deep sequencing
11 reads, 6 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr4: 160049954-160050046 [-]
antisense
OTTHUMT00000365004 ; RAPGEF2-003; intron 1
OTTHUMT00000365004 ; RAPGEF2-003; intron 1
OTTHUMT00000365004 ; RAPGEF2-003; intron 1
ENST00000505478 ; RAPGEF2-003; intron 1
ENST00000505478 ; RAPGEF2-003; intron 1
ENST00000505478 ; RAPGEF2-003; intron 1
Clustered miRNAs
< 10kb from hsa-mir-3688-1
hsa-mir-3688-2 chr4: 160049957-160050043 [+]
hsa-mir-3688-1 chr4: 160049954-160050046 [-]
Database links

Mature sequence hsa-miR-3688-5p

Accession MIMAT0019223
Sequence

15 -  

aguggcaaagucuuuccauau

 - 35

Get sequence
Evidence experimental; Solexa [2]
Predicted targets

Mature sequence hsa-miR-3688-3p

Accession MIMAT0018116
Previous IDs hsa-miR-3688
Sequence

60 -  

uauggaaagacuuugccacucu

 - 81

Get sequence
Deep sequencing 22 reads, 6 experiments
Evidence experimental; Solexa [1-2]
Predicted targets

References

1
PMID:20459673 "Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood" Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A BMC Genomics. 11:288(2010).
2
PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).