Stem-loop sequence hsa-mir-3676

Accession

MI0016077

Description

Homo sapiens miR-3676 stem-loop

Stem-loop

u    u      cc  ucua u     -    --   -     uu 
 uggu aaagcg  ug    g aaaca ggag  auc cuggg  c
 |||| ||||||  ||    | ||||| ||||  ||| |||||  g
 accg uuucgc  ac    c uuugu ccuc  ugg gaccc  a
a    u      --  --cc c     g    cg   c     ua 

Deep sequencing

6049 reads, 45 experiments

Genome context

• Coordinates (GRCh37.p5): chr17: 8090493-8090577 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-3676

• hsa-mir-4521: chr17: 8090263-8090322 [+]
• hsa-mir-3676: chr17: 8090493-8090577 [+]

Database links

• ENTREZGENE: 100500892;MIR3676

Mature sequence hsa-miR-3676-5p

• Accession: MIMAT0022734
• Sequence: 27 - aggagauccuggguu - 41
• Deep sequencing: 236 reads, 26 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3676-5p
  • MIRDB:hsa-miR-3676-5p
  • TARGETMINER:hsa-miR-3676-5p

Mature sequence hsa-miR-3676-3p

• Accession: MIMAT0018100
• Previous IDs: hsa-miR-3676
• Sequence: 60 - ccguguuucccccacgcuuu - 79
• Deep sequencing: 744 reads, 16 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3676-3p
  • MIRDB:hsa-miR-3676-3p
  • RNA22-HSA:hsa-miR-3676-3p
  • TARGETMINER:hsa-miR-3676-3p

References

1. PMID:20459673 "Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood" Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A BMC Genomics. 11:288(2010).