Stem-loop sequence hsa-mir-3673

Accession

MI0016074

Description

Homo sapiens miR-3673 stem-loop

Stem-loop

             gaa          gaa              gaa   a 
auauauauauaug   uguauauacg   uauauauauauaug   ugu u
|||||||||||||   ||||||||||   ||||||||||||||   |||  
uauauauauauau   gcauauaugu   guauauauauauau   gca a
             aag          aag              aag   u 

Genome context

• Coordinates (GRCh37.p5): chr8: 130508088-130508189 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000380580 ; RP11-3O20.1-002; intron 1

  OTTHUMT00000380581 ; RP11-3O20.1-001; intron 1

  OTTHUMT00000380582 ; RP11-3O20.1-003; intron 1

  OTTHUMT00000380580 ; RP11-3O20.1-002; intron 1

  OTTHUMT00000380581 ; RP11-3O20.1-001; intron 1

  OTTHUMT00000380582 ; RP11-3O20.1-003; intron 1

  OTTHUMT00000380580 ; RP11-3O20.1-002; intron 1

  OTTHUMT00000380581 ; RP11-3O20.1-001; intron 1

  OTTHUMT00000380582 ; RP11-3O20.1-003; intron 1

  ENST00000523151 ; RP11-3O20.1-002; intron 1

  ENST00000446592 ; RP11-3O20.1-001; intron 1

  ENST00000520048 ; RP11-3O20.1-003; intron 1

  ENST00000523151 ; CCDC26-002; intron 1

  ENST00000446592 ; CCDC26-001; intron 1

  ENST00000520048 ; CCDC26-003; intron 1

  ENST00000523151 ; CCDC26-002; intron 1

  ENST00000446592 ; CCDC26-001; intron 1

  ENST00000520048 ; CCDC26-003; intron 1

Clustered miRNAs

< 10kb from hsa-mir-3673

• hsa-mir-3669: chr8: 130509594-130509674 [-]
• hsa-mir-3673: chr8: 130508088-130508189 [-]

Database links

• ENTREZGENE: 100500848;MIR3673

Mature sequence hsa-miR-3673

• Accession: MIMAT0018096
• Sequence: 71 - auggaauguauauacggaaua - 91
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3673
  • MIRDB:hsa-miR-3673
  • RNA22-HSA:hsa-miR-3673
  • TARGETMINER:hsa-miR-3673

References

1. PMID:20459673 "Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood" Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A BMC Genomics. 11:288(2010).