Stem-loop sequence hsa-mir-3665

Accession MI0016066
Description Homo sapiens miR-3665 stem-loop
Stem-loop 
---  -  -   gc   -  --c     c   -     g       -  -      g 
   gc gg gcg  ggc gg   ggcag agc agcag ugcgggg cg gcggcc c
   || || |||  ||| ||   ||||| ||| ||||| ||||||| || |||||| g
   cg cc cgc  ucg cc   ucguc uug ucguc acgccuc gc cgccgg c
ccu  a  a   gu   a  ucu     -   c     g       a  u      u
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Deep sequencing
215 reads, 18 experiments
Comments

This sequence was predicted as a miRNA by Xie et al. [1] and validated later by microarray [2].

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr13: 78272147-78272251 [-]
antisense
OTTHUMT00000045346 ; SLAIN1-003; intron 1
OTTHUMT00000355018 ; SLAIN1-009; 3'UTR (exon 1)
OTTHUMT00000045346 ; SLAIN1-003; intron 1
OTTHUMT00000355018 ; SLAIN1-009; 3'UTR (exon 1)
OTTHUMT00000045346 ; SLAIN1-003; intron 1
OTTHUMT00000355018 ; SLAIN1-009; 3'UTR (exon 1)
ENST00000422114 ; SLAIN1-003; intron 1
ENST00000466548 ; SLAIN1-009; 3'UTR (exon 1)
ENST00000389459 ; SLAIN1-203; 3'UTR (exon 1)
ENST00000422114 ; SLAIN1-003; intron 1
ENST00000466548 ; SLAIN1-009; 3'UTR (exon 1)
ENST00000389459 ; SLAIN1-203; 3'UTR (exon 1)
ENST00000422114 ; SLAIN1-003; intron 1
ENST00000466548 ; SLAIN1-009; 3'UTR (exon 1)
Database links

Mature sequence hsa-miR-3665

Accession MIMAT0018087
Sequence

25 -  

agcaggugcggggcggcg

 - 42

Get sequence
Evidence experimental; microarray [1]
Predicted targets

References

1
PMID:15735639 "Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals" Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M Nature. 434:338-345(2005).
2
PMID:20559549 "Large-scale expression analysis reveals distinct microRNA profiles at different stages of human neurodevelopment" Smith B, Treadwell J, Zhang D, Ly D, McKinnell I, Walker PR, Sikorska M PLoS One. 5:e11109(2010).